Geobiodiversity Database (GBDB) in stratigraphic, palaeontological and palaeogeographic research: graptolites as an example
Bibliographic record
Abstract
The Geobiodiversity Database (GBDB) Project is dedicated to the construction and maintenance of a web-enabled taxonomic, stratigraphic and geographic database for information gathered from the fossil record. Its goal is to facilitate regional and global scientific collaborations focused on studying the history, diversity, geography and environmental context of life on Earth. After 7 years of development, its abundant data resources and diverse integrated functions make it a useful platform for stratigraphic, palaeontological and palaeogeographic analysis. Graptolites are the first major fossil group that has been the focus of our efforts to compile, standardize, digitize and analyse over the past several years. Here, we use the graptolite group as an example to introduce the major data resources and functionality of the GBDB.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.003 | 0.007 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.007 | 0.016 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.003 | 0.004 |
| Open science | 0.002 | 0.004 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.014 | 0.011 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".