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Record W1968598345 · doi:10.1007/s13213-014-0818-y

Diversity of plant growth-promoting Paenibacillus mucilaginosus isolated from vegetable fields in Zhejiang, China

2014· article· en· W1968598345 on OpenAlexfundno aff
Jing-Jiang Lu, Ai-Qin Xue, Zhaoyun Cao, Suijuan Yang, Xiufang Hu

Bibliographic record

VenueAnnals of Microbiology · 2014
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicLegume Nitrogen Fixing Symbiosis
Canadian institutionsnot available
FundersNatural Science Foundation of Zhejiang ProvinceInstitute of GeneticsNational Natural Science Foundation of China
KeywordsRAPDDendrogramBiologyPaenibacillusIntergenic regionGenetic diversity16S ribosomal RNABacteriaGeneBotanyMicrobiologyGeneticsGenome

Abstract

fetched live from OpenAlex

Paenibacillus mucilaginosus is a biofertilizer used widely for its P-, K-mineralizing and N 2 -fixing activities. The phenotypic and genotypic diversities of 27 P. mucilaginosus strains or isolates were investigated. The strains had some shared morphological and biochemical characteristics, yet they displayed some diversities. Colony and capsule size varied from 2.00 to 5.72 mm and 200.07 to 857.23 μm 2 , respectively. Polysaccharide production was 2.04–13.12 mg mL −1 , which correlated positively with both capsule ( r = 0.714) and colony ( r = 0.824) sizes. A pH decrease of 1.21–2.62 was correlated positively with the dissolution of P ( r = 0.777) and K ( r = 0.778). The dissolved P and K concentrations were 0.05–102.72 mg L −1 and 0.02–27.92 mg L −1 , respectively. The fixed nitrogen concentration was 0.47–18.28 mg L −1 . These bacteria also revealed genotypic diversity at gene, repetitive sequence and genome levels. Altogether, 249 bands were amplified using 18 random amplified polymorphic DNA (RAPD) primers, and the resulting dendrogram showed that the strains were grouped into two clusters according to their origins. Each cluster was divided into two branches: one with higher polysaccharide and acid production, and one with lower production. The gyr B gene and enterobacterial repetitive intergenic consensus (ERIC) gave similar results. In conclusion, as P. mucilaginosus genetic variability described by RAPD and gyr B gene analyses showed some correspondence with polysaccharide and acid diversity, the molecular characterization methods employed in the present study can be utilized in identification of strains with functions in P-, K -mineralizing and N 2 -fixing. Further work is necessary to determine the exact biomarker(s) of these functions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.147
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.207
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2014
Admission routes1
Has abstractyes

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