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Record W1970199280 · doi:10.4236/ajps.2014.515244

Outlier Stands of Quaking Aspen in the Davis Mountains of West Texas: Clone or Clones?

2014· article· en· W1970199280 on OpenAlexaboutno aff
Jerritt Nunneley, O. W. Van Auken, John P. Karges

Bibliographic record

VenueAmerican Journal of Plant Sciences · 2014
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBioenergy crop production and management
Canadian institutionsnot available
FundersU.S. Forest ServiceTexas Academy of ScienceU.S. Department of AgricultureTexas Biomedical Research InstituteNature ConservancyUniversity of Texas at San Antonio
KeywordsMicrosatelliteBiologyclone (Java method)Genetic diversityAlleleBotanyGeneticsGeneDemography

Abstract

fetched live from OpenAlex

Populus tremuloides (quaking aspen) is found from the Pacific to the Atlantic Ocean in the northern United States and Canada, and at higher elevations in the western United States and northern Mexico. While P. tremuloides can reproduce sexually or asexually, it is primarily a clonal species in the intermountain west, reproducing vegetatively via root sprouts, yielding genetically identical stems or ramets. In west Texas, isolated, outlier stands occur in the Guadalupe, Davis, and Chisos Mountains at an elevation of approximately 2300 m. This study utilized seven microsatellites or simple sequence repeats (SSRs) to examine leaf samples from 10 widely separated stems in 10 isolated P. tremuloides individual stands within the Davis Mountains to determine the level of clonal and genetic diversity. We then examined differentiation among stands. Each stem sampled within a stand was genetically identical to all stems examined in that stand or was part of a clone. There were eight genetically identical clones from these ten stands, with three stands being genetically identical or part of the same clone. Many of the genotypes shared several of the same alleles and the remaining alleles were only a few base pairs apart. Some of these alleles have been previously identified in other western North American P. tremuloides stands. Microsatellites identified several triploid patterns consistent with possible aneuploidy, which is concurrent with previous studies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.016
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.253
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2014
Admission routes1
Has abstractyes

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