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Record W1971792310 · doi:10.1139/f08-178

A mitochondrial multigene approach contributing to the systematics of the brook and river lampreys and the phylogenetic position of Eudontomyzon mariae

2008· article· en· W1971792310 on OpenAlexvenueno aff
Miriam Blank, Karl Jürss, Ralf Bastrop

Bibliographic record

VenueCanadian Journal of Fisheries and Aquatic Sciences · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
Fundersnot available
KeywordsLampetraBiologyLampreyMitochondrial DNAZoologyPhylogenetic treeMonophylyEvolutionary biologySystematicsEcologyTaxonomy (biology)GeneFisheryGeneticsClade

Abstract

fetched live from OpenAlex

The evolution of nonparasitic brook lamprey forms and their relationship to the morphological similar parasitic river lampreys are long-standing questions in lamprey research. The present study examines the utility of 11 mitochondrial gene segments (a total of 3800 base pairs) to discriminate the closely related members of the European species pair Lampetra fluviatilis and Lampetra planeri . The intent was to identify fast-evolving genes in the mtDNA that might allow a discrimination of pair members. Therefore, the noncoding regions as the fastest evolving gene segments of animal mtDNA were also included. The results revealed that in all investigated loci, L. fluviatilis and L. planeri were genetically indistinguishable, indicating either a very recent divergence event or ongoing gene flow between both species. The position of the Ukrainian brook lamprey, Eudontomyzon mariae , and the phylogentic relationships within the Lampetrini was inferred from partial cytochrome b by adding available sequences from GenBank to the data set. Eudontomyzon mariae formed a monophyletic cluster with Lampetra aegyptera and the European species pair. A reintegration of E. mariae in the genus Lampetra is therefore recommended.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.193
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2008
Admission routes1
Has abstractyes

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