AKT/Protein Kinase B Regulation of BCL Family Members during Oxysterol-induced Apoptosis
Bibliographic record
Abstract
Cells of the vasculature, including macrophages, smooth muscle cells, and endothelial cells, exhibit apoptosis in culture upon treatment with oxidized low density lipoprotein, as do vascular cells of atherosclerotic plaque. Several lines of evidence support the hypothesis that the apoptotic component of oxidized low density lipoprotein is one or more oxysterols, which have been shown to induce apoptosis through the mitochondrial pathway. Activation of the mitochondrial pathway of apoptosis is regulated by members of the BCL family of proteins. In this study, we demonstrate that, in the murine macrophage-like cell line P388D1, oxysterols (25-hydroxycholesterol and 7-ketocholesterol) induced the degradation of the prosurvival protein kinase AKT (protein kinase B). This led, in turn, to the activation of the BCL-2 homology-3 domain-only proteins BIM and BAD and down-regulation of the anti-apoptotic multi-BCL homology domain protein BCL-xL. These responses would be expected to activate the pro-apoptotic multi-BCL homology domain proteins BAX and BAK, leading to the previously reported release of cytochrome c observed during oxysterol-induced apoptosis. Somewhat surprisingly, small interfering RNA knockdown of BAX resulted in a complete block of the induction of apoptosis by 25-hydroxycholesterol. Cells of the vasculature, including macrophages, smooth muscle cells, and endothelial cells, exhibit apoptosis in culture upon treatment with oxidized low density lipoprotein, as do vascular cells of atherosclerotic plaque. Several lines of evidence support the hypothesis that the apoptotic component of oxidized low density lipoprotein is one or more oxysterols, which have been shown to induce apoptosis through the mitochondrial pathway. Activation of the mitochondrial pathway of apoptosis is regulated by members of the BCL family of proteins. In this study, we demonstrate that, in the murine macrophage-like cell line P388D1, oxysterols (25-hydroxycholesterol and 7-ketocholesterol) induced the degradation of the prosurvival protein kinase AKT (protein kinase B). This led, in turn, to the activation of the BCL-2 homology-3 domain-only proteins BIM and BAD and down-regulation of the anti-apoptotic multi-BCL homology domain protein BCL-xL. These responses would be expected to activate the pro-apoptotic multi-BCL homology domain proteins BAX and BAK, leading to the previously reported release of cytochrome c observed during oxysterol-induced apoptosis. Somewhat surprisingly, small interfering RNA knockdown of BAX resulted in a complete block of the induction of apoptosis by 25-hydroxycholesterol. Many of the pathological events associated with the development of atherosclerosis are believed (1.Witztum J.L. Steinberg D. Trends Cardiovasc. Med. 2001; 11: 93-102Crossref PubMed Scopus (387) Google Scholar) to be mediated by oxidized low density lipoprotein (ox-LDL). 1The abbreviations used are: ox-LDL, oxidized low density lipoprotein; 25-OHC, 25-hydroxycholesterol; ETYA, 5,8,11,14-eicosatetraynoic acid; AACOCF3, arachidonyl trifluoromethyl ketone; GFP, green fluorescent protein; myr, myristoylated; BH3, BCL-2 homology-3; STAT, signal transducer and activator of transcription. 1The abbreviations used are: ox-LDL, oxidized low density lipoprotein; 25-OHC, 25-hydroxycholesterol; ETYA, 5,8,11,14-eicosatetraynoic acid; AACOCF3, arachidonyl trifluoromethyl ketone; GFP, green fluorescent protein; myr, myristoylated; BH3, BCL-2 homology-3; STAT, signal transducer and activator of transcription. The constitutive uptake by macrophages of ox-LDL is through specialized scavenger receptors, resulting in these cells becoming lipid-laden foam cells (2.Steinbrecher U.P. Biochim. Biophys. Acta. 1999; 1436: 279-298Crossref PubMed Scopus (188) Google Scholar). The formation of such cells is the hallmark of atherosclerosis. Furthermore, ox-LDL has been shown to be cytotoxic to macrophages (3.Hardwick S.J. Hegyi L. Clare K. Law N.S. Carpenter K.L. Mitchinson M.J. Skepper J.N. J. Pathol. 1996; 179: 294-302Crossref PubMed Scopus (123) Google Scholar) through a process requiring such receptors (4.Wintergerst E.S. Jelk J. Rahner C. Asmis R. Eur. J. Biochem. 2000; 267: 6050-6059Crossref PubMed Scopus (89) Google Scholar, 5.Rusiñol A.E. Yang L. Thewke D. Panini S.R. Kramer M.F. Sinensky M.S. J. Biol. Chem. 2000; 275: 7296-7303Abstract Full Text Full Text PDF PubMed Scopus (61) Google Scholar). This cytotoxicity could be very important in the atherogenicity of ox-LDL through the lysis of foam cells and the concomitant deposition of lipids in the coronary vasculature. The cytotoxic effects of ox-LDL have been shown to proceed, at least in part, through apoptotic pathways, in general (reviewed in Refs. 6.Martinet W. Kockx M.M. Curr. Opin. Lipidol. 2001; 12: 535-541Crossref PubMed Scopus (112) Google Scholar and 7.Colles S.M. Maxson J.M. Carlson S.G. Chisholm G.M. Trends Cardiovasc. Med. 2001; 11: 131-138Crossref PubMed Scopus (167) Google Scholar), as well as in macrophages, in particular (3.Hardwick S.J. Hegyi L. Clare K. Law N.S. Carpenter K.L. Mitchinson M.J. Skepper J.N. J. Pathol. 1996; 179: 294-302Crossref PubMed Scopus (123) Google Scholar, 8.Muller K. Dulku S. Hardwick S.J. Skepper J.N. Mitchinson M.J. Atherosclerosis. 2001; 156: 133-144Abstract Full Text Full Text PDF PubMed Scopus (43) Google Scholar, 9.Panini S.R. Yang L. Rusiñol A.E. Sinensky M.S. Bonventre J.V. Leslie C.C. J. Lipid Res. 2001; 42: 1678-1686Abstract Full Text Full Text PDF PubMed Google Scholar). The cholesterol oxidation products (oxysterols) found in ox-LDL (10.Schroepfer G.J. Physiol. Rev. 2000; 80: 361-554Crossref PubMed Scopus (823) Google Scholar) have been recognized as a probable basis for its cytotoxicity (11.Chisolm G.M. Ma G. Irwin K.C. Martin L.L. Gunderson K.G. Linberg L.F. Morel D.W. DiCorleto P.E. Proc. Natl. Acad. Sci. U. S. A. 1994; 91: 11452-11456Crossref PubMed Scopus (191) Google Scholar, 12.Sevanian A. Hodis H.N. Hwang J. McLeod L.L. Peterson H. J. Lipid Res. 1995; 36: 1971-1986Abstract Full Text PDF PubMed Google Scholar), at least in part, via apoptotic mechanisms (7.Colles S.M. Maxson J.M. Carlson S.G. Chisholm G.M. Trends Cardiovasc. Med. 2001; 11: 131-138Crossref PubMed Scopus (167) Google Scholar, 13.Panini S.R. Sinensky M.S. Curr. Opin. Lipidol. 2001; 12: 529-533Crossref PubMed Scopus (107) Google Scholar, 14.Harada-Shiba M. Kinoshita M. Kamido H. Shimokado K. J. Biol. Chem. 1998; 273: 9681-9687Abstract Full Text Full Text PDF PubMed Scopus (233) Google Scholar). A model compound for such oxysterols is 25-hydroxycholesterol (25-OHC), which has been shown to induce apoptosis in monocyte-macrophage (9.Panini S.R. Yang L. Rusiñol A.E. Sinensky M.S. Bonventre J.V. Leslie C.C. J. Lipid Res. 2001; 42: 1678-1686Abstract Full Text Full Text PDF PubMed Google Scholar, 15.Aupeix K. Weltin D. Mejia J.E. Christ M. Marchal J. Freyssinet J.-M. Bischoff P. Immunobiology. 1995; 194: 415-428Crossref PubMed Scopus (102) Google Scholar, 16.Harada K. Ishibashi S. Miyashita T. Osuga J.-I. Yagyu H. Ohashi K. Yazaki Y. Yamada N. FEBS Lett. 1997; 411: 63-66Crossref PubMed Scopus (49) Google Scholar) and lymphoid (17.Bansal N. Houle A. Melnykovych G. FASEB J. 1991; 5: 211-216Crossref PubMed Scopus (114) Google Scholar, 18.Christ M. Luu B. Mejia J.E. Moosbrugger I. Bischoff P. Immunology. 1993; 78: 455-460PubMed Google Scholar) cell lines in the range of 1-10 μm. Prior studies have been consistent with the activation of the mitochondrial death pathway by oxysterols with its canonical cytochrome c release (19.Yang L. Sinensky M.S. Biochem. Biophys. Res. Commun. 2000; 278: 557-563Crossref PubMed Scopus (43) Google Scholar, 20.Lizard G. Gueldry S. Sordet O. Monier S. Athias A. Miguet C. Bessede G. Lemaire S. Solary E. Gambert P. FASEB J. 1998; 12: 1651-1663Crossref PubMed Scopus (190) Google Scholar). Cytochrome c release from mitochondria is regulated, in turn, through the activation of pro-apoptotic BCL family members, along with possible inactivation of anti-apoptotic BCL family members (21.Kaufmann S.H. Hengartner M.O. Trends Cell Biol. 2001; 11: 526-534Abstract Full Text Full Text PDF PubMed Scopus (597) Google Scholar). In this study, we describe the role of the AKT-regulated BAX/BAD pathway in oxysterol-induced apoptosis of murine macrophage cell lines. Materials—RAW 264.7 cells were purchased from American Type Culture Collection (Manassas, VA). P388D1 cells (MAB variant) were provided by Dr. Edward Dennis (University of California, San Diego, CA) (22.Shinohara H. Balboa M.A. Johnson C.A Balsinde J. Dennis E.A. J. Biol. Chem. 1999; 274: 12263-12268Abstract Full Text Full Text PDF PubMed Scopus (143) Google Scholar). RPMI 1640 medium and Dulbecco's modified Eagle's medium were from Invitrogen. NovaCell I fetal bovine serum was from Nova-Tech (Grand Island, NE). All other cell culture reagents were obtained from Invitrogen. 5,8,11,14-Eicosatetraynoic acid (ETYA), Ac-DEVD-aldehyde, Ac-DEVD-7-amino-4-trifluoromethyl coumarin, and arachidonyl trifluoromethyl ketone (AACOCF3) were purchased from BIOMOL Research Labs Inc. (Plymouth Meeting, PA). Oxysterols were purchased from STERALOIDS, Inc. (Wilton, NH). All antibodies were purchased from Cell Signaling Technology, Inc. (Beverly, MA), with the exception of anti-AKT1/2 antibody (Santa Cruz Biotechnology, Santa Cruz, CA), anti-Myc antibody (Upstate Biotechnology, Inc., Charlottesville, VA), and anti-HSP70 antibody (Stressgen Biotech Corp., Victoria, British Columbia, Canada). Peroxidase-conjugated secondary antibodies were from Pierce. pEGFP-C3 was from Clontech. Proteasome inhibitor I was from Calbiochem. MitoTracker™ Red was from Molecular Probes, Inc. (Eugene, OR). Cell Culture—All cell lines were maintained in a humidified atmosphere of 5% CO2 and 95% air at 37 °C. RAW 264.7 cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum, 10 mm Hepes buffer (pH 7.4), 2 mm glutamine, 1 mm sodium pyruvate, 100 units/ml penicillin, 100 μg/ml streptomycin, and 50 μm 2-mercaptoethanol. P388D1 cells were cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum, 2 mm glutamine, 1 mm sodium pyruvate, 100 units/ml penicillin, and 100 μg/ml streptomycin. Caspase-3 Assay—P388D1 cells were seeded at 2 × 106/well in 12-well culture plates, and RAW 264.7 cells at 2.5 × 106/well in 6-well culture plates. The medium was supplemented with in or of or was to the medium 2 to the of the and cells were by and at × for The cells were with in lysis buffer A mm (pH mm 10 mm sodium and 10 mm sodium for 10 and at × for at °C. The or was for protein the and for as of were for 2.5 at 37 in buffer mm Hepes (pH 10% and 2 mm μm in the and of a inhibitor at 100 to the of the was a with a with of and of the was by the fluorescent obtained in the of the inhibitor from the fluorescent obtained in the of the inhibitor and to the protein of the treatment was in and the are as the was from Signaling Technology, with and and pEGFP-C3 the of the The was by and RAW 264.7 cells of in RAW 264.7 RAW 264.7 cells were Cells were and with for with cells were observed a In mitochondria were with MitoTracker™ Red the were obtained by of a with a or and was by cells with a that small interfering that for the were and Inc., and The was by the of and P388D1 cells × were with a the and or to the were by in medium 1 for by in were by for of the The were to in medium 10 μg/ml for The cells were and maintained in medium μg/ml were obtained from The of BAX was by cell from the cells, and of cells were with a the of the (Upstate Biotechnology, to the were by in medium 1 for by 10 in μg/ml The were and for of the protein by with antibody Signaling Technology, and anti-Myc were maintained in medium μg/ml P388D1 cells were seeded at 2 × 106/well in 6-well culture plates. the cells were with and with or with to the of the was to for to the of and of Cell and cells were to a density of 2 × in medium supplemented with or of of cells were and with lysis buffer mm (pH mm 1 mm 1 mm 2.5 mm sodium 1 mm 1 mm and 1 μg/ml and for was from the by for 10 at × and the protein in the was by were by and to The were with protein Probes, to of the and of proteins to the The were antibodies for the protein of and the secondary antibodies The proteins of were by as cells were in medium for 2 and with for Cells were and for in medium 1 mm and or 10 μg/ml Cells were as and to with were to the and the of AKT in the was by and AKT of AKT was a AKT kinase Signaling Technology, the antibody to AKT was used to AKT from cell The was with protein in the of and kinase AKT to of was by antibody and by in P388D1 Cells through a have previously induction of apoptosis in a cell line and a monocyte-macrophage cell line as release and (9.Panini S.R. Yang L. Rusiñol A.E. Sinensky M.S. Bonventre J.V. Leslie C.C. J. Lipid Res. 2001; 42: 1678-1686Abstract Full Text Full Text PDF PubMed Google Scholar). of we in of cells and the well of the murine macrophage P388D1 cells in studies of (22.Shinohara H. Balboa M.A. Johnson C.A Balsinde J. Dennis E.A. J. Biol. Chem. 1999; 274: 12263-12268Abstract Full Text Full Text PDF PubMed Scopus (143) Google Scholar), we P388D1 cells apoptosis in to oxysterols in a a K. Ishibashi S. Miyashita T. Osuga J.-I. Yagyu H. Ohashi K. Yazaki Y. Yamada N. FEBS Lett. 1997; 411: 63-66Crossref PubMed Scopus (49) Google Scholar) that apoptosis in P388D1 cells and as was observed for the other cell that the induction of apoptosis was by the inhibitor and by ETYA, inhibitor of AKT in P388D1 (protein kinase has been well as anti-apoptotic kinase J. Curr. Opin. Cell Biol. 1998; PubMed Scopus Google Scholar) that in cell G. L. Curr. Opin. 1998; PubMed Scopus Google Scholar). In a role for AKT has been to the of macrophages H. H. J. Med. 2001; 194: PubMed Scopus (191) Google Scholar). the of treatment with the of AKT in the murine macrophage cell line was with as The that AKT was in P388D1 cells in to treatment with The of down-regulation of AKT was by and that treatment a in the of AKT in P388D1 cells studies that treatment the of degradation of AKT Furthermore, the was observed with that this is the of treatment with inhibitor I the and of AKT in This was to this degradation was for the in its as well as to the of regulated The demonstrate that of the degradation of AKT the of its in to treatment A and the by which the of AKT to be through of its of This of degradation is consistent with regulated to this role for AKT in apoptosis. we the of of a of AKT M.J. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar) the activation of by a AKT in cells was shown to be to that in P388D1 cells as in by in and cells was to be to induction of apoptosis by or as by and the that this was to in the of to cells from oxysterol-induced activation was by with the of Activation of BAD and of by which AKT inactivation is to apoptosis is through the of BAD by AKT G. L. Curr. Opin. 1998; PubMed Scopus Google Scholar). AKT BAD at resulting in its in the to J. H. Yang E. J. S.J. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar, L. M. C. R. G. 1997; 278: PubMed Scopus Google Scholar, S.R. H. S. H. Y. 1997; 91: Full Text Full Text PDF PubMed Scopus Google Scholar). In the of BAD by of S. J. Curr. Opin. PubMed Scopus Google Scholar). This in its to the mitochondria M. J.L. J. Biol. Chem. 1999; 274: Full Text Full Text PDF PubMed Scopus (123) Google Scholar, N. S. Y. T. 1999; PubMed Scopus Google Scholar, S. T. S.J. 2001; Full Text Full Text PDF PubMed Scopus Google Scholar), via its domain J. H. K. J. G. S.J. J. Biol. Chem. 1997; Full Text Full Text PDF PubMed Scopus Google Scholar) with the anti-apoptotic BCL family members BCL-2 and G. J. J. S.J. 1995; 80: Full Text PDF PubMed Scopus Google Scholar). These are events in the mitochondrial apoptotic pathway that in canonical cytochrome c release 2001; PubMed Scopus Google Scholar). we have previously that oxysterols cytochrome c release from mitochondria during apoptotic induction in other cell (19.Yang L. Sinensky M.S. Biochem. Biophys. Res. Commun. 2000; 278: 557-563Crossref PubMed Scopus (43) Google Scholar), we that a of the observed AKT degradation would be activation of BAD activation be through of its or by its The of BAD from P388D1 cells with antibody is consistent with of In BAD was observed to be in and cells the in the anti-apoptotic of the in The of mitochondrial BAD were consistent with in the mitochondrial of BAD treatment of BAD was by of murine RAW 264.7 macrophages with a a has previously been to demonstrate BAD activation in N. S. Y. T. 1999; PubMed Scopus Google Scholar). RAW 264.7 cells were used for this and the of a of the of the fluorescent The a of BAD from a to a with the mitochondrial This is the to be expected for the of BAD associated with N. S. Y. T. 1999; PubMed Scopus Google BAD to the RAW 264.7 cells were with cells were with 10 μg/ml and for The of the was by as The cell is shown and is a fluorescent that and A. S. S.J. Full Text Full Text PDF PubMed Scopus Google Scholar) have evidence for of domain-only proteins. The is by which through apoptosis by and inactivation of anti-apoptotic multi-BCL homology domain family domain-only proteins in the activate the pro-apoptotic multi-BCL homology domain family members by to release cytochrome of one of these proteins has been shown to be by AKT N.S. L. J. Cell Biol. 156: PubMed Scopus Google Scholar). P388D1 cells for of BIM treatment by The are consistent with in BIM in cells and in mitochondria of in of by of cytochrome c from mitochondria in to by the domain-only proteins would be expected to the inactivation of the anti-apoptotic multi-BCL homology domain proteins and the activation of the pro-apoptotic multi-BCL homology domain proteins. the of BAD are BCL-2 and BCL-xL. has been reported that BAD the death of G. J. J. S.J. 1995; 80: Full Text PDF PubMed Scopus Google Scholar). Furthermore, that P388D1 cells BCL-2 This that the of BAD during induction of apoptosis is BCL-xL. has been reported that AKT the of the that treatment its N.S. L. J. Cell Biol. 156: PubMed Scopus Google Scholar). of treatment that this of by as from was observed the A. S. S.J. Full Text Full Text PDF PubMed Scopus Google Scholar, C. A. K. G. P. J. Biol. Chem. 278: Full Text Full Text PDF PubMed Scopus Google Scholar) the of BAD in mitochondria is that BAD to would in activate the pro-apoptotic multi-BCL homology domain family members BAX and to release cytochrome c G. J. J. S.J. 1995; 80: Full Text PDF PubMed Scopus Google Scholar, L. S.J. Biochem. Biophys. Res. Commun. PubMed Scopus Google Scholar). that P388D1 cells and with BAX the L. S.J. Biochem. Biophys. Res. Commun. PubMed Scopus Google Scholar) and mitochondrial and found in mitochondria has been shown that BAX and have that of BAX the apoptotic to a of that through the pathway T. S.J. 2001; PubMed Scopus Google Scholar). that the pathway as expected in the induction of apoptosis by oxysterols, we the of small interfering RNA knockdown of BAX the apoptotic to we were to a of P388D1 cells that to be in BAX as by This apoptotic to In of to resulted in cell death and activation This is to degradation of the resulting in a in its as by This is consistent with the of AKT the of the in of The in this are consistent with the that important in the induction of apoptosis by oxysterols is degradation of The of AKT has been to be regulated by J. Curr. Opin. Cell Biol. 1998; PubMed Scopus Google Scholar). In one well apoptotic signal that induced by activation of protein to of a role P. Res. Scopus Google Scholar). have been other of regulated AKT degradation a role in apoptotic signal apoptosis is by degradation of AKT D. M. N. T. A. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), as is the induction of apoptosis by the L. C. M. T. Full Text Full Text PDF PubMed Scopus Google Scholar), probable of apoptosis with D. M. N. T. A. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, S. A. L. J. 2000; PubMed Scopus Google Scholar). is in this that have been to a role in oxysterol-induced apoptosis M. Kinoshita M. Kamido H. Shimokado K. J. Biol. Chem. 1998; 273: 9681-9687Abstract Full Text Full Text PDF PubMed Scopus (233) Google Scholar, 20.Lizard G. Gueldry S. Sordet O. Monier S. Athias A. Miguet C. Bessede G. Lemaire S. Solary E. Gambert P. FASEB J. 1998; 12: 1651-1663Crossref PubMed Scopus (190) Google Scholar). important is the activation of AKT degradation is or of the during apoptosis. are consistent with activation of AKT degradation the was observed in as as we have previously observed activation to be in to treatment in as as (19.Yang L. Sinensky M.S. Biochem. Biophys. Res. Commun. 2000; 278: 557-563Crossref PubMed Scopus (43) Google Scholar). the of degradation by a inhibitor is consistent with a and of a AKT in the activation of by 25-OHC, consistent with activation of AKT degradation the other is that the degradation of by treatment in consistent with a of AKT degradation The responses of the BCL family members in this are from the of AKT The role of AKT in and inactivation of BAD is well G. L. Curr. Opin. 1998; PubMed Scopus Google Scholar, J. H. Yang E. J. S.J. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar, L. M. C. R. G. 1997; 278: PubMed Scopus Google Scholar, S.R. H. S. H. Y. 1997; 91: Full Text Full Text PDF PubMed Scopus Google Scholar, S. J. Curr. Opin. PubMed Scopus Google Scholar, M. J.L. J. Biol. Chem. 1999; 274: Full Text Full Text PDF PubMed Scopus (123) Google Scholar, N. S. Y. T. 1999; PubMed Scopus Google Scholar, S. T. S.J. 2001; Full Text Full Text PDF PubMed Scopus Google Scholar, J. H. K. J. G. S.J. J. Biol. Chem. 1997; Full Text Full Text PDF PubMed Scopus Google Scholar, G. J. J. S.J. 1995; 80: Full Text PDF PubMed Scopus Google and is that of AKT resulted in of BAD and its to the mitochondria and would be expected to with the anti-apoptotic multi-BCL homology domain family to apoptotic induction is through of AKT of its role in through the pathway S.R. 1999; PubMed Scopus Google Scholar, J.N. J. D. M. T. Res. 2001; PubMed Scopus Google Scholar, N. Yamada Y. S. Y. K. Y. M. N. M. PubMed Scopus Google Scholar), of the anti-apoptotic multi-BCL homology domain family N.S. L. J. Cell Biol. 156: PubMed Scopus Google Scholar, K. T. K. H. K. N. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). down-regulation of the domain-only protein BIM by AKT has been reported N.S. L. J. Cell Biol. 156: PubMed Scopus Google Scholar), and of BIM in cells and mitochondria in to is consistent with this In the mitochondrial apoptotic BIM to the of the pro-apoptotic multi-BCL homology domain family members BAX and BAK, the release of cytochrome c A. S. S.J. Full Text Full Text PDF PubMed Scopus Google Scholar). to apoptotic induction by down-regulation of and of BAD to mitochondria and of BIM to activation of Somewhat surprisingly, of apoptosis in to treatment small interfering RNA knockdown of we were to by a with BAX that apoptotic has been reported that that through the apoptotic pathway are more to BAX to T. S.J. 2001; PubMed Scopus Google Scholar), and we have observed such a to has been reported that apoptosis in through a signal pathway that of at S. M. G.M. Biol. PubMed Scopus Google Scholar). This is signal to through AKT H. J. J. Biol. Chem. 2001; Full Text Full Text PDF PubMed Scopus Google Scholar). have that have other in including protein kinase and protein kinase Google Scholar, S.H. M.J. J. Biol. Chem. 278: Full Text Full Text PDF PubMed Scopus Google Scholar). in macrophages, in to be more these other S.H. M.J. J. Biol. Chem. 278: Full Text Full Text PDF PubMed Scopus Google Scholar). this was a the activation of the protein pathway during the induction of apoptosis by cholesterol of macrophages B. Y. D. M. G. E.A. D. I. Cell Biol. 5: PubMed Scopus Google Scholar). The was to be the of cholesterol leading to the The induction of apoptosis to be at least in from this apoptotic to through a signal pathway requiring acid release (9.Panini S.R. Yang L. Rusiñol A.E. Sinensky M.S. Bonventre J.V. Leslie C.C. J. Lipid Res. 2001; 42: 1678-1686Abstract Full Text Full Text PDF PubMed Google Scholar) and formation M. Kinoshita M. Kamido H. Shimokado K. J. Biol. Chem. 1998; 273: 9681-9687Abstract Full Text Full Text PDF PubMed Scopus (233) Google Scholar, 20.Lizard G. Gueldry S. Sordet O. Monier S. Athias A. Miguet C. Bessede G. Lemaire S. Solary E. Gambert P. FASEB J. 1998; 12: 1651-1663Crossref PubMed Scopus (190) Google Scholar), of which be expected to be of the AKT degradation reported cholesterol activate AKT degradation and oxysterols activate one or more of the protein to be the of G.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".