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Record W1976330536 · doi:10.1091/mbc.e11-12-0974

Cell biology of micro-organisms and the evolution of the eukaryotic cell

2012· article· en· W1976330536 on OpenAlexaffabout
Sean Crosson, Joel B. Dacks

Bibliographic record

VenueMolecular Biology of the Cell · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtist diversity and phylogeny
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsBiologyContext (archaeology)Eukaryotic cellEvolutionary biologyComputational biologyComparative genomicsGenomeCell biologyGenomicsCellGeneticsGenePaleontology

Abstract

fetched live from OpenAlex

A comparative or evolutionary approach is a powerful addition to the cell biologist's armory.It can provide context for observations in more classical model systems; it can elucidate the forces shaping the morphology, organization, and complexity of the cell; and it can identify new phenomena that may eventually be recognized as crucial to how cells work.Over the past 15 years, genome sequencing has facilitated comparative work in microbial eukaryotes, while advances in cellular imaging technologies have opened up prokaryotes as models for the study of cell biology.At the 2011 ASCB meeting, the Minisymposium entitled "Cell Biology of Micro-organisms and the Evolution of the Eukaryotic Cell" highlighted mechanisms that underpin the evolution of complexity in cells, described new and unexpected microbial cellular phenomena, and reported the development of technologies that will allow us to explore new avenues in the study of microbial cells.The session began with the theme of eukaryotic cell evolution and emergent complexity.Using a combination of comparative genomics and structural modeling Fred Mast (University of Alberta) described an evolutionary model for how multiple organellar cargoes compete for transport by myosin V (Mast et al., 2011).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.005
Scholarly communication0.0020.003
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.187
Teacher spread0.183 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes2
Has abstractyes

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