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Record W1980469214 · doi:10.1160/th09-02-0083

From crisis to opportunity: A perspective on the heparin crisis

2009· review· en· W1980469214 on OpenAlexaboutno aff
Zachary Shriver, Ram Sasisekharan

Bibliographic record

VenueThrombosis and Haemostasis · 2009
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProteoglycans and glycosaminoglycans research
Canadian institutionsnot available
FundersNational Institute of General Medical SciencesNational Heart, Lung, and Blood InstituteNational Institutes of Health
KeywordsMedicineHeparinAdverse effectIntensive care medicineThrombosisSurgeryInternal medicine

Abstract

fetched live from OpenAlex

Thromb Haemost 2009; 102: 854–858 Heparin is a mixture of polysaccharide chains isolated from a biological source, porcine intestinal mucosa, and is used clinically primarily as a prophylactic agent to prevent thrombosis as well as an initial treatment of established venous thrombosis (1). Heparin has enjoyed widespread use as a medicinal agent; it and insulin are, on a unit basis, the most widely used medications in the clinic. Heparin is baseline therapy in a number of situations, such as kidney dialysis and medical intervention in the case of of acute coronary events. In terms of worldwide production, most of the crude, partially-purified, heparin is produced in China; in addition, China is a major locale for purification of crude heparin to form the active pharmaceutical ingredient. In late 2007 and early 2008, clusters of serious allergic-type events were reported in patients undergoing hemodialysis who were receiving heparin (Fig. 1). The first observation was made in a paediatric patient at Children’s Hospital in St. Louis (MO, USA) in mid-November, with additional cases reported in January of 2008. These initial cases were reported to the Missouri Department of Health and Senior Services which then promptly notified the Centers for Disease Control (CDC). On January 4th, the CDC alerted the US Food and Drug Administration (FDA) of the cluster of adverse events. The set of clinical findings coupled with the notion that heparin, a major pharmaceutical agent, was involved in the onset of adverse events triggered an investigation into the root cause in the hopes of quickly averting further harm to patients. The FDA, in conjunction with Baxter Laboratories (Deerfield, Illinois, USA), first withdrew from the market specific lots of heparin on January 17th, and later, on February 28th, all heparin manufactured by the company. Concomitant with the unfolding situation in the United States, suspect heparin lots were identified first in Germany and then in a number of other countries, including Canada, the Netherlands, France, Italy, Japan, China, Australia, and New Zealand. Efforts were made to identify the source of these allergictype reactions, and these initial investigations ruled out many obvious causes, such as the presence of adventitious viral agents or the presence of greater levels of protein impurities in suspect versus non-suspect lots of material (2). Shortly thereafter, on March 5th, the FDA released screening tests, employing nuclear magnetic resonance (NMR) and capillary electrophoresis (CE), which could be used to screen heparin lots and determine whether they were acceptable for use (3). Based on initial results from the screening tests and delineation of suspect lots from those that were clean, properties of the non-heparin material present within suspect lots could be surmised (Fig. 2). First, in the CE method, based on the migration properties of the unknown material with reference to heparin, as well as its UV-absorbing properties, the contaminant was likely to be a polysaccharide which had a higher charge density than heparin. Second, based on a distinctive proton NMR signature at 2.1–2.2 ppm, the polysaccharide contaminant was suspected to contain N-acetylgalactosamine. However, complicating the interpretation and identification of a contaminant was the fact that heparin can often be co-purified with other sulfated glycosaminoglycans, such as dermatan sulfate and chondroitin sulfate, which also contain N-acetylgalactosamine (see bottom panel of Fig. 2B). Thus, there was the additional question of whether the signatures associated with suspect heparin lots measured with these tests were simply “harmless” impurities within heparin or, conversely, an agent (or agents) which could lead to the development of allergic-type responses. An additional complicating factor was that, concurrent with the spike in serious adverse events, there was a widespread outbreak of blue-ear virus among Chinese pigs. Thus, were the signatures associated with suspect heparin the result of impurities arising from a change in manufacturing or the source material or were they the result of something else? To solve this set of questions, address the root cause of the spike in serious adverse events, and provide a scientific foundation upon which quality control tests could be developed, the FDA brought together a multidisciplinary team from the agency, academia, and industry. In a matter of weeks, beginning in early March, this team identified the signatures from the screening tests as belonging to oversulfated chondroitin sulfate (OSCS) (4), a complex polysaccharide mixture in its own right which had never before been observed in heparin. Multiple lines of evidence converged to provide definitive identification of OSCS including multidimensional NMR, enzymatic digestion and HPLC

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.026
Threshold uncertainty score0.062

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.009
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.002
Science and technology studies0.0050.014
Scholarly communication0.0110.021
Open science0.0030.008
Research integrity0.0260.028
Insufficient payload (model declined to judge)0.0180.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.146
GPT teacher head0.416
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations24
Published2009
Admission routes1
Has abstractyes

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