MétaCan
Menu
Back to cohort
Record W1982152162 · doi:10.1021/jf034744i

Pattern Similarity Analysis of Amino Acid Sequences for Peptide Emulsification

2004· article· en· W1982152162 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueJournal of Agricultural and Food Chemistry · 2004
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMachine Learning in Bioinformatics
Canadian institutionsToronto Metropolitan UniversityUniversity of British ColumbiaDalhousie University
FundersMorinaga Milk Industry
KeywordsPeptideAmino acidChemistryHomology (biology)Residue (chemistry)ProlinePolarStructural similarityBiological systemChromatographyBiochemistryBiologyPhysics

Abstract

fetched live from OpenAlex

A new computer program for homology similarity search (HSS) was introduced. Application of the HSS to peptide sequences of short peptides with fewer 32 amino acid residues has explained the underlying mechanism of their emulsifying ability. It was found that certain regularity in the frequency of alternate polar/apolar cycle with high hydrophobic similarity density was required to obtain good emulsion. To supplement this required regularity, charge distribution, molecular flexibility, and a structural torsion caused by a proline residue might also play roles. Keywords: Homology similarity search; peptide emulsion; pattern similarity; amino acid sequence; QSAR; hydrophobicity distribution

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.104
Threshold uncertainty score0.244

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.235
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it