Inferring a classification of the Adenophorea (Nematoda) from nucleotide sequences of the D3 expansion segment (26/28S rDNA)
Bibliographic record
Abstract
Nucleotide sequences of the D3 expansion segment of the 28S rDNA gene were used to reconstruct evolutionary relationships within the Adenophorea. Neighbor-joining and parsimony analyses of representatives of most major taxa revealed a paraphyletic Adenophorea (p = 0.0005). Within Adenophorea, the Enoplia, Enoplida, and Enoplina were paraphyletic (p = 0.0024, 0.0014, and 0.0120, respectively). A major division was evident within the Enoplida, with one lineage consisting of a basal Thoracostomopsidae and Enoplidae, and a second lineage consisting of Oncholaimidae and Encheliididae. Tripyloidina clustered close to the basal enoplid branch and formed a monophyletic taxon. Although appearing as paraphyletic in the maximum-parsimony and neighbor-joining trees, constraining Chromadoria and Chromadorida into monophyletic groups did not result in a longer tree. Within the Chromadoria, the order Desmodorida sensu Malakhov (1994) was paraphyletic. However, Desmodorida sensu Lorenzen (1994), which does not include Ceramonematidae, was monophyletic. Monhysterida formed a monophyletic order within Chromadoria, equivalent to Chromadorida and Desmodorida. The position of the Comesomatidae was tentatively identified among the Chromadorida, however, the possibility of their placement among the Monhysterida cannot be excluded completely.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".