MétaCan
Menu
Back to cohort
Record W1984451809 · doi:10.1139/b09-034

Amplified fragment length polymorphism analysis reveals high genetic variation in the Ouachita Mountain endemic <i>Carex latebracteata</i> (Cyperaceae)

2009· article· en· W1984451809 on OpenAlexafffundvenue
Bruce A. Ford, Anne C. Worley, Robert F. C. Naczi, Habibollah Ghazvini

Bibliographic record

VenueBotany · 2009
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotany, Ecology, and Taxonomy Studies
Canadian institutionsUniversity of Manitoba
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBiologyOutcrossingAmplified fragment length polymorphismGenetic variationPopulationOutbreeding depressionEcologyAnalysis of molecular varianceGene flowBiological dispersalGenetic variabilityEndemismConservation geneticsEvolutionary biologyInbreedingGenetic diversityMicrosatelliteAlleleGenetics

Abstract

fetched live from OpenAlex

Species with limited geographic ranges are often of conservation concern because they may possess low levels of genetic variability and thus have a reduced ability to respond to stochastic events. As a consequence, an important conservation strategy is to maximize a species’ adaptive potential by preserving natural levels of genetic variation. With this goal in mind, we assessed genetic variation within and among six populations of the Ouachita Mountain endemic Carex latebracteata Waterfall using 653 amplified fragment length polymorphism (AFLP) loci. Indices of genetic variation [% polymorphic loci, expected heterozygosity (HE), population differentiation (ΦPT)] were most consistent with an outcrossing or mixed mating system despite an inflorescence morphology that seems conducive to self-pollination. An analysis of molecular variance (AMOVA) showed that >80% of the variation occurred within populations, suggesting high levels of gene flow. The close geographic proximity of most populations, which are often adjacent to streams, may facilitate long-distance seed dispersal and help to maintain high intra-population genetic variation. Conservation strategies focused on maintaining the ecological integrity of rivers and streams, and the provision of naturally vegetated buffers would likely assist in the conservation of this and other Ouachita Mountain endemics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.222
Teacher spread0.203 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2009
Admission routes3
Has abstractyes

Explore more

Same venueBotanySame topicBotany, Ecology, and Taxonomy StudiesFrench-language works237,207