Engineering of a Staphylokinase-based Fibrinolytic Agent with Antithrombotic Activity and Targeting Capability toward Thrombin-rich Fibrin and Plasma Clots
Bibliographic record
Abstract
Current clinically approved thrombolytic agents have significant drawbacks including reocclusion and bleeding complications. To address these problems, a staphylokinase-based thrombolytic agent equipped with antithrombotic activity from hirudin was engineered. Because the N termini for both staphylokinase and hirudin are required for their activities, a Y-shaped molecule is generated using engineered coiled-coil sequences as the heterodimerization domain. This agent, designated HE-SAKK, was produced and assembled from Bacillus subtilis via secretion using an optimized co-cultivation approach. After a simple in vitro treatment to reshuffle the disulfide bonds of hirudin, both staphylokinase and hirudin in HE-SAKK showed biological activities comparable with their parent molecules. This agent was capable of targeting thrombin-rich fibrin clots and inhibiting clot-bound thrombin activity. The time required for lysing 50% of fibrin clot in the absence or presence of fibrinogen was shortened 21 and 30%, respectively, with HE-SAKK in comparison with staphylokinase. In plasma clot studies, the HE-SAKK concentration required to achieve a comparable 50% clot lysis time was at least 12 times less than that of staphylokinase. Therefore, HE-SAKK is a promising thrombolytic agent with the capability to target thrombin-rich fibrin clots and to minimize clot reformation during fibrinolysis. Current clinically approved thrombolytic agents have significant drawbacks including reocclusion and bleeding complications. To address these problems, a staphylokinase-based thrombolytic agent equipped with antithrombotic activity from hirudin was engineered. Because the N termini for both staphylokinase and hirudin are required for their activities, a Y-shaped molecule is generated using engineered coiled-coil sequences as the heterodimerization domain. This agent, designated HE-SAKK, was produced and assembled from Bacillus subtilis via secretion using an optimized co-cultivation approach. After a simple in vitro treatment to reshuffle the disulfide bonds of hirudin, both staphylokinase and hirudin in HE-SAKK showed biological activities comparable with their parent molecules. This agent was capable of targeting thrombin-rich fibrin clots and inhibiting clot-bound thrombin activity. The time required for lysing 50% of fibrin clot in the absence or presence of fibrinogen was shortened 21 and 30%, respectively, with HE-SAKK in comparison with staphylokinase. In plasma clot studies, the HE-SAKK concentration required to achieve a comparable 50% clot lysis time was at least 12 times less than that of staphylokinase. Therefore, HE-SAKK is a promising thrombolytic agent with the capability to target thrombin-rich fibrin clots and to minimize clot reformation during fibrinolysis. Acute myocardial infarction (also known as heart attack) is a leading cause of death in the Western world. It is commonly caused by the formation of a pathologic clot (thrombus) at a critical position that results in obstructing the blood flow to heart tissues. The use of blood clot dissolving agents is one of the well established methods in treating patients with acute myocardial infarction (1The International Study GroupLancet. 1990; 336: 71-75Abstract PubMed Scopus (522) Google Scholar, 2Ohman E.M. Harrington R.A. Cannon C.P. Agnelli G. Cairns J.A. Kennedy J.W. Chest. 2001; 119: 253S-277SAbstract Full Text Full Text PDF PubMed Scopus (63) Google Scholar). Results from several large scale clinical trials have firmly established the effectiveness of this approach in saving lives (1The International Study GroupLancet. 1990; 336: 71-75Abstract PubMed Scopus (522) Google Scholar, 2Ohman E.M. Harrington R.A. Cannon C.P. Agnelli G. Cairns J.A. Kennedy J.W. Chest. 2001; 119: 253S-277SAbstract Full Text Full Text PDF PubMed Scopus (63) Google Scholar, 3The GUSTO InvestigatorsN. Engl. J. Med. 1993; 329: 673-682Crossref PubMed Scopus (3706) Google Scholar). Among the clinically approved blood clot dissolving agents including streptokinase, anisoylated plasminogen streptokinase activator complex (or anistreplase), tissue-specific plasminogen activator (tPA), 1The abbreviations used are: tPA, tissue-specific plasminogen activator; APSAC, anisoylated plasminogen streptokinase activator complex; HBS, HEPES-buffered saline; HE, hirudin-E coil; HE-SAKK, hirudin-E coil-staphylokinase-K coil heterodimer; MALDI-TOF MS, matrix-assisted laser desorption/ionization-time of flight mass spectrometry; SAK, staphylokinase; SAKK, staphylokinase-K coil; T 50%, time required for 50% clot lysis. and urokinase, tPA is the most commonly used blood clot dissolving agent in the Western world. Even though tPA is fibrin-specific, its short in vivo biological half-life and sensitivity to plasminogen activator inhibitors in circulation require the use of higher doses of tPA for effective clot lysis. At the pharmacological doses used, tPA exerts only partial fibrin specificity. This results in depletion of plasma proteins such as coagulation factors V and VIII, and to a certain degree, plasminogen and fibrinogen. Approximately 57% of the patients treated with tPA can restore their blood flow to an acceptable level within 90 min after receiving the treatment (2Ohman E.M. Harrington R.A. Cannon C.P. Agnelli G. Cairns J.A. Kennedy J.W. Chest. 2001; 119: 253S-277SAbstract Full Text Full Text PDF PubMed Scopus (63) Google Scholar). Within this group, 10–30% of patients showed reocclusion shortly after clot dissolution. The reformed secondary clots are usually platelet-rich (4Jang I.K. Gold H.K. Ziskind A.A. Fallon J.T. Holt R.E. J.W. PubMed Scopus Google Scholar, Google Scholar, Gold H.K. I.K. Holt Fallon J.T. J. 1990; PubMed Scopus Google and to lysis by tPA Gold H.K. I.K. Holt Fallon J.T. J. 1990; PubMed Scopus Google Scholar). a significant of the patients from GUSTO InvestigatorsN. Engl. J. Med. 1993; 329: 673-682Crossref PubMed Scopus (3706) Google Scholar, International Study of GroupLancet. PubMed Scopus Google Scholar). To address these in the thrombolytic the of a to target thrombin-rich to the clot lysis At the the hirudin can minimize clot reformation during the of is a promising blood clot dissolving agent Med. PubMed Scopus Google Scholar). to can the fibrin of by a The complex can as the plasminogen activator to plasminogen to for clot lysis. comparable thrombolytic as tPA, several clinical trials that staphylokinase a fibrin in comparison to tPA PubMed Scopus Google Scholar, J. J. PubMed Scopus Google Scholar, PubMed Scopus Google Scholar). This fibrin 1993; PubMed Google is by a the plasminogen activity of complex is by In the complex is fibrin is to to this the complex can plasminogen to the of the is to to clot-bound J. Full Text Full Text PDF PubMed Scopus Google Scholar). the to platelet-rich plasma clots and is than tPA and streptokinase both in vitro and in Scopus Google Scholar). Therefore, is as the blood clot dissolving in this engineered thrombolytic To the of SAK, to with the capability to pathologic from and to minimize hirudin, a thrombin J. PubMed Scopus Google Scholar, J.W. Full Text PDF PubMed Scopus Google Scholar, J. Full Text PDF PubMed Google as both the agent and the targeting to clots in this engineered thrombolytic and hirudin are via a of engineered coil sequences that as the heterodimerization PubMed Scopus Google Scholar). coil is to the of to coil and a coil is to the of hirudin to hirudin-E coil of these proteins is produced from Bacillus subtilis via secretion to via an optimized co-cultivation approach. an in vitro treatment to reshuffle the disulfide bonds in hirudin J. PubMed Scopus Google both and hirudin in the are to biological activities comparable with their parent molecules. In vitro fibrin and plasma clot lysis that HE-SAKK is a thrombolytic agent in comparison to staphylokinase. of and both coil and coil sequences assembled by using several for coil and for with a R.A. Google Scholar, PubMed Scopus Google Scholar). the coil of the are to and respectively, and of the is to The sequences of are as The assembled a of a and the coil with a at the and an at the This was to as a to The coil was assembled with a approach using to a with a at the and a at the The was to to coil via a of are as sequences of both the coil and coil sequences in coil and coil and to of of subtilis for and coil is the subtilis for of It is a of the PubMed Google a staphylokinase the from coil was generated by the a of the and the in with the coil from coil is the subtilis for of hirudin-E coil and is a of PubMed Google a hirudin with at the To the a in was by a a of the and the coil The sequences of coil and hirudin-E coil are from with the and in of the coil and coil was engineered subtilis for J. 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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".