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Record W1988571105 · doi:10.1084/jem.2115insight4

New role identified for LRR-containing proteins in T cell development

2014· letter· en· W1988571105 on OpenAlexaff
Juan Carlos Zúñiga‐Pflücker

Bibliographic record

VenueThe Journal of Experimental Medicine · 2014
Typeletter
Languageen
FieldImmunology and Microbiology
Topicinterferon and immune responses
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsBiologyComputational biologyGenetics

Abstract

fetched live from OpenAlex

The Journal of Experimental MedicineIn this issue, two independent groups show that the transcription factor ZBTB20 is required for the maintenance of long-lived plasma cells following immunization with the commonly used adjuvant, alum.Intriguingly, one group found that ZBTB20 was dispensable for plasma cell survival when they used adjuvants that activate Toll-like receptors (TLRs).Protection from recurrent infections depends on long-lived plasma cells secreting high-affinity antibodies, which are generated during T cell-dependent immune responses in the germinal center reaction.But not all vaccinations or infections yield durable and protective plasma cell responses.Therefore, a better understanding of the molecular mechanisms that govern plasma cell generation and maintenance is needed in order to develop more effective vaccines.Chevrier et al. and Wang and Bhattacharya now show that the BTB-POZ transcription factor ZBTB20, which is expressed in germinal center B cells and at high levels in plasma cells, is crucial for maintaining durable antibody responses by promoting cell survival following immunization of mice with a model antigen in alum.But when Wang and Bhattacharya administered the same antigen with TLR-ligand based adjuvants they observed that ZBTB20 was dispensable for the development and survival of plasma cells.Both ZBTB20-dependent and -independent plasma cell survival pathways were B cell-intrinsic, suggesting that the immune cells activated by the corresponding adjuvants imprint longevity on the plasma cells when they are formed within the germinal centers.The mechanisms underlying this imprinting process are presently unknown and require further investigation.Chevrier et al. show clearly that the control of ZBTB20 expression differs fundamentally between germinal center B cells and plasma cells.Zbtb20 is a transcriptional target of the plasma cell master regulator IRF4 in plasma cells, but not in the majority of germinal center B cells, which lack IRF4.However, IRF4 expression is up-regulated in a small subset of late germinal center B cells that are plasma cell precursors.It is therefore possible that the ZBTB20-dependent survival program is initiated at this developmental stage through interaction with T follicular helper cells.Similarly, this particular germinal center subpopulation may be the downstream target of TLR-ligand based adjuvants.It will be important to identify the ZBTB20-equivalent transcription factor, which Wang and Bhattacharya suggest might be another BTB-POZ transcription factor, ZBTB32.An important implication of the current studies is that we need to dissect the transcription factor network that controls plasma cell generation within the germinal center in order to understand how adjuvants improve the durability of vaccines.In addition, the results clearly indicate that in vaccine development, it is important to know whether an infection triggers an alum-like or TLR-biased response.The findings also serve as a reminder to be more cautious with generalizing results obtained from the study of a single immunization model.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0050.005
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.282
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2014
Admission routes1
Has abstractyes

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