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Record W1988627638 · doi:10.5539/jas.v4n1p104

Novel BsuRI-c.930A>G-FSHb Associated with Litter Size Traits on Large White X Landrace Crossbred Sows

2011· article· en· W1988627638 on OpenAlexvenueno aff
Nakarin Pripwai, Supamit Mekchay

Bibliographic record

VenueJournal of Agricultural Science · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsnot available
FundersScience and Technology Postgraduate Education and Research Development Office, Office of the Higher Education CommissionOffice of the Higher Education CommissionDivision of ChemistryNational Center for Genetic Engineering and BiotechnologyNational Science and Technology Development Agency
KeywordsHaeIIIHaplotypeBiologyGeneticsGenotypingSingle-nucleotide polymorphismCrossbreedLitterGenBankGenotypeRestriction fragment length polymorphismGene

Abstract

fetched live from OpenAlex

The objective of this experiment was to identify the novel single nucleotide polymorphisms (SNPs) on porcine follicle stimulating hormone b subunit (FSHb) genes. Moreover, their association with litter size traits in commercial pigs will be analyzed. 1,155 Large White x Landrace crossbred sows were bled and DNA was extracted. The records included total number of piglet born (TNB), number of piglet born alive (NBA), number of piglets stillbirth (SB) and number of piglets mummified (MM). The known sequence of porcine FSHb (GenBank accession no. D00621.1) was screened homology to known sequences in term of express sequenced tags (ESTs) in public domain, GenBank. The primers were designed for amplified the novel BsuRI-c.930A>G-FSHb fragment which confirmed by PCR-RFLP and nucleotide sequencing then genotyping. The favorable cut homozygous G/G allele was highly significant higher than A/G allele in terms of TNB and NBA. While, published marker HaeIII-g.5894A>G-FSHb was not significant difference in any litter traits. For haplotype analysis, c.930A>G-g.5894A>G of FSH?, unfavorable GG/AA haplotype was significantly lower TNB and NBA than other haplotypes. Conversely, this haplotype was significantly higher MM than others. The study concluded that BsuRI-c.930A>G and the haplotype of HaeIII-g.5894A>G - BsuRI-c.930A>G of FSHb may used for marker-assisted selection on pig breeding program.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.208
Teacher spread0.192 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2011
Admission routes1
Has abstractyes

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