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The HIV vaccine pipeline, from preclinical to phase III

2001· review· en· W1988868557 on OpenAlexaboutno aff
Alan M. Schultz, James A. Bradac

Bibliographic record

VenueAIDS · 2001
Typereview
Languageen
FieldImmunology and Microbiology
TopicHIV Research and Treatment
Canadian institutionsnot available
Fundersnot available
KeywordsPandemicDeveloping countryLife expectancyHIV vaccinePublic healthPopulationMedicineDeveloped countryImmunologyEnvironmental healthHuman immunodeficiency virus (HIV)Economic growthVirologyInfectious disease (medical specialty)DiseaseDevelopment economicsCoronavirus disease 2019 (COVID-19)Vaccine trial

Abstract

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Introduction The AIDS epidemic continues to move inexorably around the globe, making its most recent inroads in China and Southeast Asia, and re-asserting itself in young gay men in places like New York City, after a period of successful behavior modification that had slowed the rate of new infections for a time. The United Nations acknowledges that HIV/AIDS could be a threat to world peace [1]. Worldwide, nearly 12 million men, women and children have become infected in just the past 2 years, and population life expectancy is actually going down in parts of sub-Saharan Africa. The developing world harbors 95% of these new infections, where there is little access to treatments that have prolonged life in industrialized countries. An effective and safe preventive vaccine remains the best hope for ending this pandemic. Vaccines have been cost-effective public health weapons against infectious disease, but some new road maps may be needed to achieve success against HIV. The favored tools of the past, live-attenuated strains and killed vaccines, have not provided a direct pathway to an AIDS vaccine. A truly attenuated and safe HIV that is still immunogenic has proven frustratingly elusive [2], and the difficulty in retaining the envelope glycoprotein on purified HIV particles has interfered with the manufacture of an adequate product to test the utility of the whole-killed approach. In addition, the challenge of producing millions of doses without allowing a single case of HIV from an improperly inactivated production lot, as would be required in the present climate, is daunting to say the least. Safely mimicking HIV infection as the modus operandi for the vaccine, using either the killed or the attenuated approach, has been frustrated so far by the biology and physical chemistry of HIV. Therefore, HIV vaccine design tilts heavily toward the 'modern' school, using the power of genetic engineering to take parts of HIV and create vaccines that could never cause AIDS. But will these 'modern' vaccines be immunogenic enough? While it is still not clear what facets of the immune response are most important for protection from infection or disease, it is now widely believed that an efficacious vaccine will need to induce both cellular and humoral immunity. This review will attempt to show the strengths and weaknesses of various approaches towards inducing and maintaining such immunity. Although each vaccine platform will have its special feature, let us not forget that all the candidates necessarily share one inescapable commonality - they must include the viral genes that contain the protective epitopes. Learning what antigens are protective, or what immune responses (or at which level of intensity or duration) are useful, can be obtained in one system, and that knowledge may be immediately transferable to the other approaches. Phase III timetable While increasingly valuable information is emerging from experiments in primates, an efficacy trial in humans under conditions of natural exposure to HIV is needed to truly prove the worth of a vaccine. In 1998, a large trial of recombinant gp120 (in a bivalent formulation combining a laboratory strain glycoprotein with a primary virus glycoprotein) began in the United States (also with sites in Canada and the Netherlands), mostly among gay men [3]. Another trial in Thailand, among intravenous drug users, completed enrollment in autumn 2000. Using gp120 to generate protective neutralizing antibody was among the earliest 'modern' vaccine concepts to emerge in the drive for an HIV vaccine [4,5], and it is now finally being put to the test. A first look at the protection data from the US trial will occur halfway through the trial in November 2001, according to the manufacturer (VaxGen, Brisbane, CA, USA). If the trial has a statistically valid lower bound of 30% efficacy at that time, the hypothesis that monomeric gp120 can prevent infection by a significant proportion of prevalent HIVs will have been proven. If the primary endpoint is not achieved in November 2001, the trial will proceed to completion. In that case, the utility of gp120 as a vaccine will have to wait until early 2003 for an answer. A second HIV vaccine is now in position for phase III clinical testing. In the years since work on gp120 began, a 'second generation' of HIV vaccines has developed, emphasizing cellular immune responses in addition to antibody and also investigating the role that proteins other than gp120 can play as protective antigens. Canarypox vaccines (ALVAC) of Aventis Pasteur (Lyon, France) are now in final phase II human trials after years of development work, devoted to learning the best way to express multiple antigens in a single recombinant vector and the most appropriate way to assess cellular immune responses. The National Institutes of Health HIV Vaccine Trials Network (HVTN) is testing a subtype B ALVAC that expresses the gag and pol genes as well as the env gene, plus epitopes from nef and int. The Walter Reed Army Institute of Research (WRAIR)/Henry M. Jackson Foundation has an ALVAC with gag and pol genes containing subtype E env in a phase II trial in Thailand. Each ALVAC vaccine probably would be tested in combination with a VaxGen gp120 boost, although none of the phase III trial protocols in development is final. If either the National Institutes of Health or WRAIR proceed with an efficacy test of the ALVAC/gp120, such a trial could begin in 2002 and not yield results until at least 2005. It is sobering to reflect on the time it takes to lead up to and then plan, mount, and enroll such trials, which then typically will run for 3 years after the last volunteer is enrolled, to assess the duration of any protective effect. This chapter will attempt to characterize what may come next for phase III clinical testing, but nothing that will be covered next is likely to be ready for phase III until 2004 or later. It will be a long wait. Envelope protein antigens (the neutralization conundrum) Monomeric gp120, the only candidate AIDS vaccine to advance to large-scale efficacy trials so far, was initially developed from laboratory strains of HIV and shown early on to be the most effective vaccine at inducing neutralizing antibodies against the laboratory strains available at the time. It was subsequently learned that HIV grown long-term in culture (i.e. a 'laboratory strain') was much more sensitive to neutralization than HIV freshly isolated from patients and only briefly adapted to culture (so-called 'primary strains') [6]. The antibodies induced in human volunteers by the original gp120 vaccines were incapable of neutralizing 'primary' HIV [7,8]. The consequences of this limited breadth of neutralization can be shown experimentally in a primate challenge study, where vaccination with a laboratory strain gp120 prevented infection if animals were challenged with a virus homologous to the vaccine but proved inadequate in protection against challenge with a heterologous virus based on a primary strain [9]. The current phase III trials of this vaccine approach will soon settle whether this research analysis is predictive of its protective potential in the real world. While it is beyond the scope of this review to address the details of HIV envelope structure and why getting vaccines to perform better in these laboratory analyses has been so hard [10], we digress to provide a short summary of attempts to improve envelope immunogens. One avenue for improvement is to design and produce immunogens that mimic 'native' HIV as closely as possible, on the assumption that the trimeric glycoprotein spike structure on the surface of primary HIV contains neutralization epitopes that cannot be duplicated on monomeric, recombinant gp120. Alternatively, on the assumption that primary HIV is intrinsically neutralization resistant because it has evolved mechanisms to hide neutralizing epitopes, another approach is to modify the structure of gp120 to expose those hidden and putatively effective neutralization epitopes. 'More native' envelope immunogens An early hypothesis to improve monomeric gp120 was to base the vaccine not on a laboratory strain, but on a primary strain. In fact, the gp120 vaccines currently in phase III trial have adapted this approach by adding a primary isolate gp120 to the original gp120 in bivalent one with an subtype E for and another with a primary subtype B for Although the hypothesis that such a gp120 will necessarily induce antibodies of neutralizing primary not in one case other have that some primary HIV can induce antibodies of neutralizing primary only the homologous strain It has been that envelope immunogens from virus strains from infected developed neutralizing may be better than at inducing breadth of although this has to be shown experimentally The of more than one of a to create a vaccine is well A attempt to neutralization by in a primate challenge to the neutralization response A human phase trial is testing a of recombinant envelope genes with to test in combination with envelope In addition, is developing a vaccine to contain and env a approach to be of with much than will probably be The envelope on the HIV surface contains gp120 in of in this by with a of structure is not are after the is gp120 and and they are to be purified the envelope protein to prevent gp120 and but the of that that can be purified of neutralizing antibodies by these has been because these are not the In attempts to truly trimeric to the trimeric spike have been One has gp120 and but by the in a bound The of this are to the on the virus but the neutralizing antibodies induced in laboratory animals show little improvement those induced by gp120 Another has a envelope by and that both the and the that the trimeric have been shown to yield a with with the gp120 but the improvement is The 'native' of HIV and the difficulty in getting large of such a product has been to a safe are to protein that not modify the protein antigens have been One from and gag and a developed, the of needed to the HIV It is that a and inactivated HIV that is immunogenic from the combination of these a inactivated HIV based on a primary isolate was and purified with by the of Aventis Although this product effective neutralizing antibodies against the homologous primary HIV in neutralization of other primary HIV was not It is that this product will be in on 'native' envelope immunogens HIV envelope proteins are from the envelope protein not only results in a virus that is more neutralization but also an infectious that is and to the envelope epitopes can also be by from the gp120 with a of the envelope by with the protein itself has been shown to induce antibodies effective not only at neutralizing homologous but also effective at neutralizing a of heterologous primary and protein immunogens from a primary strain of subtype B with being developed by CA, are to be ready for human trial 2 years for AIDS vaccine clinical trial HIV envelope structure is and to with cellular the infection there are in the envelope protein that expose neutralization epitopes The why antibodies to these epitopes are not in HIV patients is that they are only briefly have to these A was from HIV envelope proteins that were at the time of It was that this induced antibodies in of neutralizing a of primary HIV protein have been as a more way to expose envelope epitopes that only after It has been that these neutralizing antibodies The design has been by producing the as a gp120 is to the of by an This protein could actually be in and is for human testing. can be that and the for as if they were beyond the are now neutralization and envelope proteins from these will envelope A better of envelope protein structure and has to but has not to a vaccine product with of approaches gp120 in are also on the the of to from multiple one that expose neutralization epitopes or multiple one gp120 is another research approach to a better gp120 immunogens are research and far from being in a The of producing protein immunogens may this a better design is of these by viral or may be a more protein immunogens has had to with a in the that protein antigens could not induce cellular responses. with protein in the of particles was shown to induce in An HIV of of envelope proteins and with and is being by for human trial as a also can be the II pathway with inactivated This HIV is being developed for human with can induce cellular in humans as well as are in the to on the human trial in and to test these and in combination with other were among the first HIV vaccines in with is a of containing various for cellular immune responses or envelope as a to vaccines have been recent of protein immunogens protection in primate experiments although these results have proven there are why immune responses to the protein could be A of the vaccine has been and a phase trial has been the protein be 'native' or to being experimentally in humans has not been The of viral HIV vaccine design with the that getting the HIV envelope a 'native' is to a successful vaccine, in of in of the vaccine after of the genes provide such with a vector more cellular responses than with proteins or The vaccine was the first vector developed to express HIV genes it has a large for multiple genes in the to and can be in large and with recombinant vector by a protein the antibody of gag and pol genes efficacy of the vaccine against after challenge are phase trials of and env both and with gp120 One the product in combination with VaxGen gp120 and the other trial a envelope trials were up until by a of which is needed as a in case the vector to in a have been the of since this virus for as has to that in either of that in but well in (in which they can be grown in large or to the which are in to produce in these still to and early HIV genes under of early are producing these in large at has been virus This of was developed in the and has proven with since it is available and has shown results in Although with virus env were not from challenge with they had lower virus and prolonged to infection with recombinant to from infection but in a significant in challenge the in virus with an in and of the candidate This product developed by Aventis Pasteur is probably to but was by from to achieve in It has been tested in primate and will be with in trials by the candidates are being developed by and by the of New a of and The of New to the immunogens as with immunogens. Canarypox (ALVAC) This product developed by Aventis Pasteur is a successful vaccine for and has been developed as a vaccine vector through The for phase III trials of these has been The of vaccine candidates under development in this is in for and trials of HIV vaccines, and much has vaccine that cannot at for have been that provide proteins in so that vector for are that the vaccine the vector any cellular from the of the virus because the physical of the most of the viral genes from the also the of the for vaccine antigens. to the genes by these are still immunogenic the of a have for the and this can be an to now is being for and in such for human containing the from such is to be and of the must be to achieve the of viral sensitive must also be developed to prove that has the design and yield of can be a The is because of the of the viral that after can be using these and have been The virus has induced some against in and some vector have the potential to for This vector is being developed by USA). Phase trial is in 2002 for a vaccine containing a gag containing env and pol are in has developed a virus vector and has to produce a the glycoprotein can also A virus has been developed in with Aventis Pasteur and is in are all with genes of a vaccine product env and pol will combining This is a large virus is on the of and it in a that a has testing this vector gag in virus This the is from as an HIV vaccine vector is the and of virus in the for long and it is being in humans for It to and a of and itself in which is widely in humans and is a on in addition to the The developed for human are for If of vaccine is a to a successful HIV vaccine, this vector a is to A has been developed and a vaccine is under with for An has also been for virus This is in early development for both and HIV vaccine viral research on the potential of of virus has been the for a of recombinant for HIV developing for is so time have with in for or on attenuated is a that attenuated that will be more immunogenic than is to assess in advance of human testing, and this will than the approaches. as the to a vaccine for the attenuated has been as such a vaccine for A was for based on some with HIV are at the research have been developed and shown to be and effective vaccine in a primate HIV gag and env genes were shown to produce HIV particles containing HIV envelope protein HIV env have been shown to induce neutralizing antibodies in animals in animals have been using virus HIV The vaccine strain of has been as an HIV vaccine vector to the In a study, were to express a large of the of by the in or protection of a of the animals from challenge with a The of this virus is and the vaccine in the primate was actually a of of each a of genetic of the The of such a vaccine could be an for and work has on the virus attenuated vaccine strain as an HIV vaccine vector candidate This vector has because it has proven to be safe million have been with the attenuated it is to and it is effective at protective with long have with as a vector for HIV An or could be for final but the potential for from volunteers the research phase would have the potential to induce a since has the to and for the life of the An attenuated the has been shown to induce and antibodies for after the final of with this which also the nef gene, were shown to a challenge the last a a in viral after infection This of large and infection vaccines for have been tested as HIV vaccine and research continues in this can be as as well as although the of protein of 'native' env responses are and that are would to be the most The first was to express an HIV as a protein with a protein and there is an phase trial of an vector HIV it was that can be as and with this is at least in than the protein approach attenuated vector strains have developed as candidate vaccines for of these strains are being as the and it is that a product will be ready for human clinical testing in is another for which the of has been This approach because the development and testing of attenuated strains has been is another human that It can be attenuated in by of a vaccine more an has been development of this vector has been are that as vaccine antigens is that they can for production and can be to express of vaccine epitopes on from long-term patients were to on of the were homologous to HIV gp120 or but were of were and to that were then challenged with of in virus neutralization were at the of virus by of neutralization at was in the It is that cellular responses to the are also induced by with A has been developed in a system, and A has been and is for in HIV can by the of with cellular surface but in large these vector as The that itself could be to vaccine genes has new in vaccine is to new it is and to and there will be to the not have to a protein there are beyond those required for the can be purified and is It remains a for new in vaccine the of as a vaccine is some time to It was important to that the of HIV had on in have come from physical of the continues to the of of on particles with from and has data that to has data that a of in of the in Although it is to the of these to each it clear that there are better to achieve with than in Although is not effective in humoral cellular responses can be A was shown to a response in challenge of these a response was that in both and that in the animals infected with the challenge Although this to prevent infection or virus the animals better of virus in the challenge than the In another that HIV env to the gag vaccine and was challenged with a cellular responses induced by were by of either in the of protein or as the in addition to gag and env of to viral and of clinical a challenge A more approach to on as a vaccine is to as a and with a vaccine. An in of a and in addition to has been But protection was also in a recent in with and then after the last at a time cellular responses were in This vaccine multiple genes of a of or multiple the natural of the viral were in a single work multiple the for but the design was by on the evolved virus structure that multiple for the proteins from a single The pol and env under in a single This induced a cellular response challenge by the and viral to the is not limited to the of A formulation is being tested in combination with in and and CA, has to test a epitopes, with to and epitopes. is so to work with on a laboratory are is still much to be learned for and and of The under for combination with other are in candidate is not to An has that its to is up in by and In 2001, research on HIV vaccine concepts continues at a is also that a more toward and manufacture has the first time in the HIV vaccine there is of for manufacture of vaccines to for phase and 2 by and are to the of in the The in this was to review the of HIV vaccine and there to be a of and concepts the is it enough? on a The of trials are at the of the the phase III gp120 and the potential of phase III trials of are the and in and and the and trials are with the that combination and trials of each of vaccines will In that in are of candidate vaccines that have a to be in phase trials in 2002 or not until Each has been in some and they are this for approaches covered in this review are not in because they are so early in development it is to if they will advance to human testing. The in are by and this If one is in each of these in HIV the and of HIV genes for whether proteins or just epitopes are whether genes are and finally with what other vaccine they are to be there is still much that is not protective antigens and protective this may actually be a of the current may the to and duration of immune responses a Although breadth of neutralization has been to achieve so far, responses against epitopes that are have that the needed the vaccine and the of HIV in the population may be obtained from this of the immune in of the role of in the of virus in and infection with in the and of has a on the of and cellular the of this response that can be the of not us to the need for of the is for or whether will be is a that will only be in the of challenge in and efficacy The that the in a of those that have been covered in this review is It would be if a large of vaccine approaches were down the but and which move these are not but a and effective vaccine will not have a public health it can be in large so vaccination could proceed on a of The is that contain a of and protein from which we may have phase results in just a The for of a of HIV vaccine in phase human trials are better than they have been since the of the

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.036
Threshold uncertainty score0.120

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0040.003
Open science0.0010.002
Research integrity0.0020.005
Insufficient payload (model declined to judge)0.0360.016

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.412
Teacher spread0.346 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations33
Published2001
Admission routes1
Has abstractyes

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Same venueAIDSSame topicHIV Research and TreatmentFrench-language works237,207