Climate change and plant health: designing research spillover from plant genomics for understanding the role of microbial communities
Bibliographic record
Abstract
Climate change presents new challenges for managing plant health. Simultaneously, the revolution in sequencing technologies offers an exciting new perspective on whole microbial communities – and on both microbial responses to climate and microbial effects on plant health. There is still the need for a comparable revolution in experimental approaches to understand the functional roles of microbial taxa within these communities. Two approaches leveraging advances in genomics tools and analyses may contribute. First, new soil mixing experiments may be developed, where analyses of quantitative trait taxa (QTT) may be analogous to analyses of quantitative trait loci (QTL). Second, new approaches for characterizing the extended phenotype or phenome of soil microbial communities may be developed, leveraging genomic tools for Arabidopsis and other model plant species through the construction of plant genotype panels in an ‘Arabidopsitron’.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.017 | 0.011 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.002 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.002 | 0.003 |
| Open science | 0.001 | 0.002 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".