Calreticulin Affects Fibronectin-based Cell-Substratum Adhesion via the Regulation of c-Src Activity
Bibliographic record
Abstract
Calreticulin is an endoplasmic reticulum Ca2+-storage protein, which influences gene expression and cell adhesion. In this study, we show that calreticulin induces fibronectin gene expression and matrix deposition, leading to differences in cell spreading and focal adhesion formation in cells differentially expressing calreticulin. We further show that these effects of calreticulin occur via a c-Src-regulated pathway and that c-Src activity is inversely related to calreticulin abundance. Since c-Src is an important regulator of focal contact turnover, we investigated the effect of c-Src inhibition on cells differentially expressing calreticulin. Inhibition of c-Src rescued the poorly adhesive phenotype of the calreticulin-underexpressing cells in that they became well spread, commenced formation of numerous focal contacts, and deposited a rich fibronectin matrix. Importantly, we show that c-Src activity is dependent on releasable Ca2+ from the endoplasmic reticulum, thus implicating Ca2+-sensitive pathways that are affected by calreticulin in cell-substratum adhesion. We propose that calreticulin affects fibronectin synthesis and matrix assembly via the regulation of fibronectin gene expression. In parallel, calcium-dependent effects of calreticulin on c-Src activity influence the formation and/or stability of focal contacts, which are instrumental in matrix assembly and remodeling. Calreticulin is an endoplasmic reticulum Ca2+-storage protein, which influences gene expression and cell adhesion. In this study, we show that calreticulin induces fibronectin gene expression and matrix deposition, leading to differences in cell spreading and focal adhesion formation in cells differentially expressing calreticulin. We further show that these effects of calreticulin occur via a c-Src-regulated pathway and that c-Src activity is inversely related to calreticulin abundance. Since c-Src is an important regulator of focal contact turnover, we investigated the effect of c-Src inhibition on cells differentially expressing calreticulin. Inhibition of c-Src rescued the poorly adhesive phenotype of the calreticulin-underexpressing cells in that they became well spread, commenced formation of numerous focal contacts, and deposited a rich fibronectin matrix. Importantly, we show that c-Src activity is dependent on releasable Ca2+ from the endoplasmic reticulum, thus implicating Ca2+-sensitive pathways that are affected by calreticulin in cell-substratum adhesion. We propose that calreticulin affects fibronectin synthesis and matrix assembly via the regulation of fibronectin gene expression. In parallel, calcium-dependent effects of calreticulin on c-Src activity influence the formation and/or stability of focal contacts, which are instrumental in matrix assembly and remodeling. Calreticulin, a Ca2+-binding protein of the endoplasmic reticulum (ER), 3The abbreviations used are: ER, endoplasmic reticulum; [Ca2+]ER, concentration of Ca2+ within the endoplasmic reticulum; [Ca2+]c, concentration of calcium in the cytosol; ECM, extracellular matrix; FAK, focal adhesion kinase; MALDI-TOF MS, matrix-assisted laser desorption ionization time-of-flight mass spectrometry; PBS, phosphate-buffered saline; PIPES, 1,4-piperazinediethanesulfonic acid. has been shown to be involved in a great number of cellular processes (1.Bedard K. Szabo E. Michalak M. Opas M. Int. Rev. Cytol. 2005; 245: 91-121Crossref PubMed Scopus (126) Google Scholar). It is an important chaperone, working in conjunction with calnexin and protein disulfide isomerase; it affects intracellular Ca2+ homeostasis via its Ca2+ storage capacity and its effects on both the SERCA pumps and inositol 1,4,5-trisphosphate receptors (2.John L.M. Lechleiter J.D. Camacho P. J. Cell Biol. 1998; 142: 963-973Crossref PubMed Scopus (181) Google Scholar, 3.Camacho P. Lechleiter J.D. Cell. 1995; 82: 765-771Abstract Full Text PDF PubMed Scopus (200) Google Scholar). Calreticulin has been shown to affect cell adhesion via the induction of vinculin and N-cadherin expression and its involvement in β-catenin-associated pathways (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 5.Fadel M.P. Dziak E. Lo C.M. Ferrier J. Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1999; 274: 15085-15094Abstract Full Text Full Text PDF PubMed Scopus (66) Google Scholar). Finally, calreticulin overexpression causes a decrease in total cellular tyrosine phosphorylation levels (5.Fadel M.P. Dziak E. Lo C.M. Ferrier J. Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1999; 274: 15085-15094Abstract Full Text Full Text PDF PubMed Scopus (66) Google Scholar, 6.Fadel M.P. Szewczenko-Pawlikowski M. Leclerc P. Dziak E. Symonds J.M. Blaschuk O. Michalak M. Opas M. J. Biol. Chem. 2001; 276: 27083-27089Abstract Full Text Full Text PDF PubMed Scopus (49) Google Scholar). Fibronectin is a large glycoprotein which is secreted by the cell into the extracellular matrix (ECM) as a soluble dimer that, via cellular interactions, is deposited as a fibrillar meshwork that is bound to the surface of cells. Fibronectin affects the formation and the stability of cell-substratum adhesions, and conversely, cell-substratum adhesions may affect fibronectin matrix deposition (7.Katz B.Z. Zamir E. Bershadsky A. Kam Z. Yamada K.M. Geiger B. Mol. Biol. Cell. 2000; 11: 1047-1060Crossref PubMed Scopus (358) Google Scholar, 8.Geiger B. Bershadsky A. Pankov R. Yamada K.M. Nat. Rev. Mol. Cell. Biol. 2001; 2: 793-805Crossref PubMed Scopus (1857) Google Scholar). Fibronectin assembly cannot proceed without the presence of cells (9.McDonald J.A. Annu. Rev. Cell Biol. 1988; 4: 183-207Crossref PubMed Scopus (224) Google Scholar), which implies intracellular inside-out signaling pathways that are crucial for fibronectin fibrillogenesis (10.Wierzbicka-Patynowski I. Schwarzbauer J.E. J. Cell Sci. 2003; 116: 3269-3276Crossref PubMed Scopus (392) Google Scholar). Fibronectin matrices are essential for embryonic development, wound healing, and tumorigenesis (11.Wu C. Bauers R.L. Juliano R.L. McDonnell J.A. J. Biol. Chem. 1993; 268: 21883-21888Abstract Full Text PDF PubMed Google Scholar) and as such are both spatially and temporally regulated (11.Wu C. Bauers R.L. Juliano R.L. McDonnell J.A. J. Biol. Chem. 1993; 268: 21883-21888Abstract Full Text PDF PubMed Google Scholar). Thus, it is crucial to discern the mechanisms by which a fibronectin matrix is deposited and regulated. Fibronectin is bound to and regulated by cells of cell-substratum adhesions that to the to the via B. Bershadsky A. Cell Biol. 2001; PubMed Scopus Google Scholar). to to the of the into causes the of and such as and focal adhesion into cell adhesions focal focal B. Bershadsky A. Pankov R. Yamada K.M. Nat. Rev. Mol. Cell. Biol. 2001; 2: 793-805Crossref PubMed Scopus (1857) Google Scholar, B. Bershadsky A. Cell Biol. 2001; PubMed Scopus Google Scholar, Cell Biol. Full Text Full Text PDF PubMed Scopus Google Scholar, J.A. Nat. Rev. Mol. Cell. Biol. PubMed Scopus Google Scholar). a in adhesion and is a for J. Cell Sci. 1996; PubMed Google Scholar). N. N. Cell PubMed Scopus Google Scholar) shown that the of cells to on a with the with which vinculin is to focal Thus, which the of are well on the the calreticulin with the of vinculin are poorly (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar). phosphorylation has been shown to cell-substratum adhesion Z. E. B. Mol. Biol. Cell. PubMed Scopus Google Scholar, B. K. N. K. C. N. J.A. P. K. J. Cell Sci. PubMed Scopus Google Scholar, B.Z. K. E. Geiger B. Yamada K.M. J. Biol. Chem. 2003; Full Text Full Text PDF PubMed Scopus Google Scholar, C. N. J. Kam Z. Bershadsky A. Geiger B. J. Cell Sci. PubMed Scopus Google the of this to the of protein tyrosine in the regulation of cell-substratum adhesion in cells differentially expressing calreticulin. c-Src is an important of focal and to a of the and Int. J. Google Scholar, Cell Biol. PubMed Scopus Google Scholar). a Ca2+-binding protein, influences cell fibronectin matrix deposition, and cell-substratum we the activity of c-Src in cells differentially expressing calreticulin on both and on the of calreticulin in fibronectin matrix deposition and the regulation of c-Src activity via its influence on releasable Ca2+ from the Cell in calreticulin expression used for this been and (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 6.Fadel M.P. Szewczenko-Pawlikowski M. Leclerc P. Dziak E. Symonds J.M. Blaschuk O. Michalak M. Opas M. J. Biol. Chem. 2001; 276: 27083-27089Abstract Full Text Full Text PDF PubMed Scopus (49) Google Scholar, K. B. M. Michalak M. PubMed Scopus Google Scholar, Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). and used to cell K. B. M. Michalak M. PubMed Scopus Google Scholar). cells as calreticulin as as by cells as calreticulin as in with and and and as K. B. M. Michalak M. PubMed Scopus Google Scholar). by with from cellular and for to and as Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). used the in C. J.E. Opas M. Michalak M. J. Biol. Chem. Full Text PDF PubMed Google Scholar, K. Opas M. Michalak M. PubMed Scopus Google Scholar, M. Dziak E. Michalak M. J. Cell. PubMed Scopus Google and from B. Cell and used a of of the and of fibronectin in the as P. A. J. 1996; PubMed Scopus Google Scholar). the by with in in for in the presence of the to be and in and for to for of by protein by MALDI-TOF MS, the of from the and in acid. with in for and in for a the with for in the and in a the by for the in and for on and the to a for a the and by a with and by MALDI-TOF by the of the on the Cell with PBS, and with in for the cells in with for cells with and for with cells with PBS, and an Cell Fibronectin with fibronectin from in for and in surface with a to of fibronectin to and cells on in in for for in PBS, the cells for with in PIPES, and and for in and with for the in in PBS, the cells with in for the in which and in with a laser used for and and of cells and are that this and with for cells and for as c-Src inhibition cells with cells with and with for cells for and for used to the concentration of Ca2+ in the with for and for of of fibronectin and of fibronectin deposition, cells with for by in of intracellular in to with a concentration of for to a used to in intracellular on in in and to cells a concentration of to calcium from intracellular the cells on cells and in a and that with fibronectin and a the with cells Calreticulin in to cell of and (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 6.Fadel M.P. Szewczenko-Pawlikowski M. Leclerc P. Dziak E. Symonds J.M. Blaschuk O. Michalak M. Opas M. J. Biol. Chem. 2001; 276: 27083-27089Abstract Full Text Full Text PDF PubMed Scopus (49) Google Scholar, K. B. M. Michalak M. PubMed Scopus Google Scholar, Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). with calreticulin expression calreticulin cells with calreticulin as by K. B. M. Michalak M. PubMed Scopus Google Scholar), used in this that calreticulin influences the expression of an intracellular of focal we the extracellular of focal may be affected by calreticulin. on a of cell we that cells differentially expressing calreticulin in to of total cellular of for we that calreticulin levels of fibronectin in with calreticulin cells calreticulin the intracellular fibronectin protein, the the and cells fibronectin protein in calreticulin by an in the deposition of extracellular fibronectin into the matrix we effects for fibronectin the of from the cell and to by in the of from cells differentially expressing calreticulin and differences in the of a protein that the as such that in calreticulin and in calreticulin cells secreted an of this protein and this protein, the from the and by MALDI-TOF as a the protein from the with a mass of the in the with of from of to the of the secreted protein to be fibronectin these show that cells fibronectin and protein and which to a of it in the matrix. Importantly, this is in cells the calreticulin gene by a calreticulin as well as in embryonic cell with calreticulin levels with cells. M. P. and M. In is fibronectin expression in cells with calreticulin abundance. Calreticulin an Fibronectin Calreticulin Fibronectin the the of calreticulin expression and deposition of fibronectin into the to fibronectin matrix with on we that calreticulin an fibronectin matrix in fibronectin calreticulin a fibronectin which of a of and fibronectin matrix by cells that of and and of the Fibronectin in the deposition and of a fibronectin matrix is is by focal contacts, we the adhesive of cells. with to the and an to vinculin to show focal focal contact formation and a are in cells calreticulin are poorly and focal and of the number of focal cell a number of focal in calreticulin with cells Calreticulin a number of focal contacts, which are in cells fibronectin in is the and the extracellular of the is for (11.Wu C. Bauers R.L. Juliano R.L. McDonnell J.A. J. Biol. Chem. 1993; 268: 21883-21888Abstract Full Text PDF PubMed Google Scholar). We to the in fibronectin matrix assembly in cells to fibronectin expression the cell in calreticulin expression affect the total protein levels of in these cells (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 6.Fadel M.P. Szewczenko-Pawlikowski M. Leclerc P. Dziak E. Symonds J.M. Blaschuk O. Michalak M. Opas M. J. Biol. Chem. 2001; 276: 27083-27089Abstract Full Text Full Text PDF PubMed Scopus (49) Google Scholar). cell differences in the surface expression of and the in fibronectin matrix deposition in from Thus, of the and differences in its to the cell surface in cell cells which the of focal In calreticulin and focal contact formation cells an with to and focal and Fibronectin Cell and with the in Calreticulin the calreticulin-underexpressing cells to a fibronectin matrix and focal contact we an fibronectin matrix the adhesive phenotype of these cells. on fibronectin and by for vinculin and of in for of both fibronectin matrix and of fibronectin matrix deposition on in cellular and to we the cells the the fibronectin and as to into a of cells well spread, focal contacts, and deposited the calreticulin poorly with focal and In calreticulin on fibronectin and vinculin a in the number of focal in calreticulin on fibronectin on of the focal are shown in show that differentially expressing calreticulin are to by a fibronectin with the of induction in the of calreticulin It be that, cells on fibronectin effect on the of fibronectin expression the effects are to the fibronectin matrix Fibronectin and on Calreticulin and we investigated the by which calreticulin fibronectin gene expression and Since calreticulin is a regulator of Ca2+ signaling from the M. Opas M. Cell PubMed Scopus Google Scholar), we the levels of calcium in cells and with by an of the effects of on that levels of calcium in the are in calreticulin in cells Importantly, the of calcium from the via is the in cells Calreticulin show the of Ca2+ cells are the effects of Ca2+ on fibronectin expression and deposition, we with to [Ca2+]ER, with in thus that Ca2+ of the with causes a decrease in the expression of fibronectin in cell the of fibronectin deposited into the is of with It has been shown by K. A. J. I. R. N. Opas M. Michalak M. J. Cell Biol. 2001; PubMed Scopus Google Scholar) that which levels of [Ca2+]ER, Ca2+ from the is in with which show that calreticulin are in Ca2+ as with cells. Thus, we that this Ca2+ may be fibronectin gene expression and matrix Thus, we and of fibronectin by fibronectin levels which by fibronectin deposition and fibrillogenesis in cell Thus, has effects on both the expression and deposition of c-Src in to further the by which fibronectin and focal affected by calreticulin. We shown that poorly cells that calreticulin levels of total cellular in with well calreticulin M.P. Szewczenko-Pawlikowski M. Leclerc P. Dziak E. Symonds J.M. Blaschuk O. Michalak M. Opas M. J. Biol. Chem. 2001; 276: 27083-27089Abstract Full Text Full Text PDF PubMed Scopus (49) Google Scholar), thus implicating tyrosine in the regulation of cell spreading and cell-substratum adhesion. the inhibition of tyrosine by the poorly adhesive phenotype of calreticulin cells with for and for and that a inhibition of tyrosine in calreticulin-underexpressing cells induces cell spreading and fibronectin effects of in calreticulin and without effect We investigated the activity of a regulator of focal adhesion turnover, the tyrosine in cells differentially expressing calreticulin. We the c-Src which has been J.A. E. Cell PubMed Scopus Google Scholar). an and in which the J. Biol. PubMed Scopus Google Scholar, K. E. R. J. Mol. Biol. 2005; PubMed Scopus Google Scholar). we show that calreticulin-underexpressing cells the levels of c-Src calreticulin the levels of and cells c-Src levels the in cell of calreticulin expression the levels of FAK, as by the to be in with the the of In the cells on a fibronectin levels to be in cell which by a in total c-Src levels that c-Src activity is to regulation by signaling from the matrix. Inhibition of c-Src the of Calreticulin activity in poorly we with a c-Src to it the poorly adhesive phenotype of the calreticulin has been shown to the of and thus activity M. Google Scholar, P. M. M. J. Biol. Chem. 1995; Full Text Full Text PDF PubMed Scopus Google Scholar). We show that the levels of as well as of FAK, as by and of cell the cell spreading a cell spreading by focal contact formation as by vinculin which in the calreticulin in the of vinculin protein the focal contact formation c-Src inhibition is a of the induction of vinculin gene expression a of vinculin from to focal with focal contact fibronectin deposition into the as by and levels of intracellular fibronectin of c-Src focal contact formation in as via vinculin is with of the number of focal in an of cells. calreticulin and cells and cells a number of with with the in the number of in the calreticulin calreticulin cells. of vinculin in levels used as a of intracellular and extracellular fibronectin in the matrix of an in fibronectin deposited into the matrix in cell fibronectin levels fibronectin deposition in of fibronectin deposition in cell calreticulin calreticulin c-Src we fibronectin gene expression and deposition to be Ca2+-sensitive and that fibronectin affects c-Src we that via its effect on total [Ca2+]ER, may the activity of this we cells differentially expressing calreticulin to for to the levels of c-Src with the in the cells In to the of and Ca2+ we in the presence of in cell with the of in the calreticulin of this are the of the fibronectin gene as by calreticulin and the regulation of c-Src activity by both of which affect cell-substratum adhesion. both effects are of calreticulin in induces fibronectin and protein, which on extracellular fibronectin matrix regulation of fibronectin gene activity is P. A. J. 1996; PubMed Scopus Google Scholar, J. 245: PubMed Google Scholar, J.E. Cell Biol. PubMed Scopus Google Scholar), fibronectin gene expression is to and signaling pathways P. A. J. 1996; PubMed Scopus Google Scholar, J.E. Cell Biol. PubMed Scopus Google Scholar, J. Cell Mol. Biol. PubMed Scopus Google Scholar). of these may be affected by the calreticulin expression (1.Bedard K. Szabo E. Michalak M. Opas M. Int. Rev. Cytol. 2005; 245: 91-121Crossref PubMed Scopus (126) Google Scholar). We show that fibronectin expression is to intracellular Ca2+ fibronectin expression in cell the Since Ca2+ in the [Ca2+]ER, the of Ca2+ from the on calreticulin are in with a number of that total is related to the of calreticulin and is the of Ca2+ releasable with (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar, K. A. J. I. R. N. Opas M. Michalak M. J. Cell Biol. 2001; PubMed Scopus Google Scholar, N. E. J. Biol. Chem. Full Text PDF PubMed Google Scholar, C. E. P. R. J. J. Cell Biol. 1995; PubMed Scopus Google Scholar, C. P. Mol. Biol. Cell. 1998; PubMed Scopus Google Scholar). effects of calreticulin on gene expression and cell are with Ca2+ a in these In it has been that calreticulin may be a in a signaling in the of the M. Opas M. Cell PubMed Scopus Google Scholar). Calreticulin is for such its Ca2+ may the within the the of Ca2+ such as and/or inositol 1,4,5-trisphosphate affect the of the Ca2+ and affect the activity of It be that calreticulin in the ER, such as the the the cell we calreticulin in the in focal (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar), and the of C. E. P. R. J. J. Cell Biol. 1995; PubMed Scopus Google Scholar). PubMed Scopus Google Scholar) has that calreticulin to the of this has been shown and has been shown within an show that calreticulin has effect on cell cell adhesion Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). the of P. J.E. J. Biol. Chem. 2000; Full Text Full Text PDF PubMed Scopus Google Scholar) has calreticulin to the extracellular of the cell surface of we calreticulin to the cell surface of used in the We that calreticulin as a Ca2+ the and gene expression by in an to signaling pathway M. Opas M. Cell PubMed Scopus Google Scholar, E. Opas M. J. 4: Scopus Google Scholar). may be the for expression shown by to be regulated by calreticulin (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 5.Fadel M.P. Dziak E. Lo C.M. Ferrier J. Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1999; 274: 15085-15094Abstract Full Text Full Text PDF PubMed Scopus (66) Google Scholar). of vinculin in calreticulin causes assembly of and focal in cells (4.Opas M. Szewczenko-Pawlikowski M. Jass G.K. Mesaeli N. Michalak M. J. Cell Biol. 1996; 135: 1913-1923Crossref PubMed Scopus (109) Google Scholar, 5.Fadel M.P. Dziak E. Lo C.M. Ferrier J. Mesaeli N. Michalak M. Opas M. J. Biol. Chem. 1999; 274: 15085-15094Abstract Full Text Full Text PDF PubMed Scopus (66) Google Scholar). vinculin expression has been with focal contact and cell spreading Geiger B. A. Cell PubMed Scopus Google Scholar). the expression of vinculin is affected by the cell spreading c-Src be a of vinculin from to focal contacts, thus the adhesive of calreticulin calreticulin may in an contact signaling signaling pathway is to affect both focal contact such as c-Src and and extracellular such as the effects of calreticulin on fibronectin calreticulin may fibronectin matrix assembly to number of focal and of the fibronectin be and for fibronectin matrix deposition to occur (11.Wu C. Bauers R.L. Juliano R.L. McDonnell J.A. J. Biol. Chem. 1993; 268: 21883-21888Abstract Full Text PDF PubMed Google Scholar, Yamada K.M. J. Cell Biol. PubMed Scopus Google Scholar). Calreticulin large the cell calreticulin-underexpressing cells Since cells and surface expression of the in surface of within focal by vinculin to focal Zamir E. Kam Z. Geiger B. Bershadsky J. Cell Biol. 2001; PubMed Scopus Google Scholar), its N. N. Cell PubMed Scopus Google Scholar, R. M. N. Cell 1998; PubMed Scopus Google Scholar). of vinculin in focal in these cells may as a for for fibronectin In a fibronectin the of focal Schwarzbauer J.E. Cell 1996; 4: Scopus Google Scholar, J. J.A. J. Cell Biol. PubMed Scopus Google Scholar). and is related to activity Cell 2000; PubMed Scopus Google Scholar, E. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), thus to focal contact formation and fibronectin matrix a fibronectin cell to and to and focal cell in calreticulin-underexpressing which focal of focal further the of fibronectin deposition and matrix in on focal a in fibronectin fibrillogenesis B. Bershadsky A. Pankov R. Yamada K.M. Nat. Rev. Mol. Cell. Biol. 2001; 2: 793-805Crossref PubMed Scopus (1857) Google Scholar, E. M. N. Yamada K.M. B.Z. Bershadsky A. Kam Z. Geiger B. Nat. Cell Biol. 2000; 2: PubMed Scopus Google Scholar, R. E. B.Z. K. C. Yamada K.M. J. Cell Biol. 2000; PubMed Scopus Google Scholar). been into focal and that in and R. M. Geiger B. PubMed Scopus Google Scholar). focal and fibrillar adhesions in fibronectin matrix the in the study, they be in the calreticulin with focal and fibrillar adhesions are to be by Zamir E. Geiger B. J. Cell Sci. 2001; PubMed Google Scholar). phosphorylation of focal contact has been shown to be an important regulator of focal Z. E. B. Mol. Biol. Cell. PubMed Scopus Google Scholar, B. K. N. K. C. N. J.A. P. K. J. Cell Sci. PubMed Scopus Google Scholar, B.Z. K. E. Geiger B. Yamada K.M. J. Biol. Chem. 2003; Full Text Full Text PDF PubMed Scopus Google Scholar, C. N. J. Kam Z. Bershadsky A. Geiger B. J. Cell Sci. PubMed Scopus Google Scholar). In the of a by is in focal Sci. A. 82: PubMed Scopus Google Scholar). is the by which calreticulin affects tyrosine phosphorylation in cells the levels of c-Src of as well as the levels of is in with that has shown that is of into focal in cells with activity Zamir E. Geiger B. J. Cell Sci. 2001; PubMed Google Scholar), as is the with the calreticulin shown that c-Src is an important of focal contact and J.A. Nat. Rev. Mol. Cell. Biol. PubMed Scopus Google Scholar, Zamir E. Geiger B. J. Cell Sci. 2001; PubMed Google Scholar, J. 1998; PubMed Scopus Google Scholar). of cells by causes cell cell and J.A. Nat. Rev. Mol. Cell. Biol. PubMed Scopus Google Scholar, J. Cell Sci. PubMed Google Scholar). Cell 2000; PubMed Scopus Google Scholar) that the of adhesion to c-Src and c-Src activity with focal adhesion and cell PubMed Scopus Google Scholar, Sci. A. PubMed Scopus Google Scholar, K. J. Cell Biol. PubMed Scopus Google Scholar, M. K. Biol. PubMed Google Scholar, Mol. Cell. Biol. PubMed Scopus Google Scholar, A. J.E. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). Finally, with and cells that these cells an of focal contact formation and an in the of focal Zamir E. Geiger B. J. Cell Sci. 2001; PubMed Google Scholar). with these we that the calreticulin with the c-Src a poorly adhesive phenotype with which well and adhesive and c-Src Importantly, total cellular levels of c-Src the in cell that calreticulin a in c-Src gene cells on a fibronectin matrix rescued the poorly adhesive phenotype of the calreticulin and a decrease in c-Src activity as well as fibronectin may as a cells been shown to an number of cell-substratum N. K. N. J. M. 1995; PubMed Scopus Google Scholar). of in adhesion with the P. A. C. K. 4: Google Scholar, R. J. Cell Biol. 1998; PubMed Scopus Google Scholar, A. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, Sci. Full Text Full Text PDF PubMed Scopus Google Scholar), which to cell Cell 2000; PubMed Scopus Google Scholar). cell in the calreticulin and the c-Src activity in these cells may be phosphorylation and thus for the of in this cell Cell 2000; PubMed Scopus Google Scholar) further that of cells to the to the of which and induces the of focal is with which that of to a fibronectin c-Src c-Src inhibition deposition of fibronectin into the and intracellular fibronectin levels this that of fibronectin into the that the cells fibronectin from the into a for the from with which show that the fibronectin gene is in cells E. J. PubMed Scopus Google Scholar, J.D. P. J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) and that this regulation E. C. 2005; PubMed Scopus Google Scholar). J. Opas M. Michalak M. Scholar) has shown that c-Src the of Ca2+ the via calcium and it has been that Ca2+ the is a of Ca2+ in cells J. R. 2005; PubMed Scopus Google Scholar). is a in the regulation of both focal and Ca2+ that been to calreticulin. We that c-Src of the signaling pathway in the of the with which via a Ca2+-sensitive cell-substratum adhesion. c-Src of c-Src is to to the ER, to Ca2+ from the that of c-Src activity is and has for the pathway by which an protein the an contact regulation has important which calreticulin a as well as in shown that c-Src activity in a of R. Cell. Full Text Full Text PDF PubMed Scopus Google Scholar). c-Src calreticulin expression the of of c-Src is a of signaling pathways cell and differentially expressing calreticulin as well as the to calreticulin by We for Dziak for and for and for and of the
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".