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Record W2002600822 · doi:10.1021/tx800058r

Understanding the Toxicity of Phenols: Using Quantitative Structure−Activity Relationship and Enthalpy Changes To Discriminate between Possible Mechanisms

2008· article· en· W2002600822 on OpenAlex
Hooman Shadnia, James S. Wright

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueChemical Research in Toxicology · 2008
Typearticle
Languageen
FieldChemistry
TopicFree Radicals and Antioxidants
Canadian institutionsCarleton University
Fundersnot available
KeywordsPhenolsEnthalpyChemistryToxicityQuantitative structure–activity relationshipComputational chemistryBiological systemOrganic chemistryThermodynamicsBiologyStereochemistryPhysics

Abstract

fetched live from OpenAlex

Experimental studies of the "extended toxicity" of substituted phenols are mainly of two types: the toxicity due to phenoxyl radical formation and the toxicity caused by metabolites, for example, the formation of quinones. Quantitative structure-activity relationship (QSAR) studies of phenol toxicity have dealt with the formation of phenoxyl radicals using bond dissociation enthalpy (BDE) of parent phenols, have obtained good correlations with experimental data, and have concluded that phenoxyl radicals are the toxic agent. However, the actual toxic mechanism has remained poorly defined. In this study, we follow the metabolic pathways of monosubstituted phenols to their quinone end products and calculate enthalpy changes for all relevant reactions. These enthalpy changes are first used as descriptors for a QSAR analysis. Many of these new descriptors, including some relevant to quinone formation, are highly correlated with the BDE values of the parent phenols. Therefore, a QSAR analysis by itself is inconclusive as to the mechanism of toxicity. To better define the problem, we have returned to a detailed analysis of net enthalpy changes. We show that the formation of phenoxyl radical is the rate-determining step: This step is slow for electron-withdrawing group substituted phenols (EWG-phenols), whereas it is fast for electron-donating group substituted phenols (EDG-phenols). The study of net enthalpy changes of reactions reveals that once the phenoxyl radical is present, the corresponding quinone is rapidly formed, so that quinone formation may be ultimately responsible for toxicity of EDG-phenols. We then demonstrate how the suggested mechanism (quinone formation) is successful in predicting the toxicity of some complex phenols, which are predicted poorly using the phenoxyl radical argument. We also discuss the toxicities of some estrogens in light of the quinone mechanism.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.045
Threshold uncertainty score0.434

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.531
GPT teacher head0.437
Teacher spread0.094 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it