Bibliographic record
Abstract
An increased need for efficient storage and retrieval of crop performance data is driven by a desire to increase the value of crop performance tests, opportunities in crop modelling, opportunities to facilitate cross planning, opportunities to discover genes that affect economic traits, and data mining applications that require better integration of data from multiple sources. Thus, an increased number of stakeholders need access to crop data that are current, accurate, and complete. There is also a growing sophistication and awareness of the role and capabilities of modern informatics techniques in biological research – an area that has become known as “bioinformatics”. Bioinformatics, in partnership with statistics, can play a vital role in increasing the value of crop performance data. However, much of this role remains to be developed and adopted by the communities that gather and use these data. Part of the challenge is that phenotypic data are complex, and extensive information about the context under which the data were collected is required. This can include information about experimental design, soil and climatic conditions, treatments applied, germplasm tested, plant growth stages, and traits measured. If context is neglected, data are useless, but if context is overly complex, it may be ignored or used improperly. Several solutions have been developed to address these needs. These include commercial software packages, open-source collaborations, and a new application developed by the authors. Each solution has strengths and weaknesses, and each addresses different types of needs. This review will discuss the motivations for developing and using crop information systems, the current status and availability of crop information systems, and the challenges that must be met to achieve future potential. Key words: Bioinformatics, database, software, statistics, ontology, variety trial
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.014 | 0.055 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.013 | 0.026 |
| Science and technology studies | 0.002 | 0.001 |
| Scholarly communication | 0.011 | 0.019 |
| Open science | 0.004 | 0.006 |
| Research integrity | 0.003 | 0.004 |
| Insufficient payload (model declined to judge) | 0.037 | 0.035 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".