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Record W2013768075 · doi:10.4161/rna.6.2.8095

How does the journey affect the message(RNA)?

2009· review· en· W2013768075 on OpenAlexafffund
Alan Cochrane

Bibliographic record

VenueRNA Biology · 2009
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Research and Splicing
Canadian institutionsUniversity of Toronto
FundersCanadian Institutes of Health ResearchOntario HIV Treatment Network
KeywordsBiologyRNACytoplasmMessenger RNACell biologyRNA-binding proteinSmall nuclear RNATransfer RNAeIF4AGeneticsGeneNon-coding RNA

Abstract

fetched live from OpenAlex

Research has determined that different RNAs within the cell (mRNA, snRNA, rRNA, tRNA) use distinct pathways to facilitate their movement from the nucleus to the cytoplasm. But does the nature of the pathway used affect the metabolism of the RNA? Recent studies have begun to address this question by examining the regulation of similar mRNAs exported by different pathways. We summarize the observations from several groups indicating that, in the case of HIV-1 mRNAs, the export pathway has dramatic effects on sensitivity to a translational inhibitor as well as the fate of the encoded proteins. Given that the mRNAs do not differ in physical structure (5' cap, 3' poly A tail), these findings suggest that the export pathway generates a distinct RNP composition that dictates the fate of the mRNA. Recent results have begun to define the composition of the HIV-1 RNP and, in turn, further re-enforced the hypothesis that these viral mRNAs have very distinct fates in the cytoplasm.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.988
Threshold uncertainty score0.642

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.353
Teacher spread0.317 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2009
Admission routes2
Has abstractyes

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