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Record W2013818057 · doi:10.1371/journal.ppat.1004299

Regulatory RNAs Involved in Bacterial Antibiotic Resistance

2014· review· en· W2013818057 on OpenAlexafffund
David Lalaouna, Alex Eyraud, Svetlana Chabelskaya, Brice Felden, Éric Massé

Bibliographic record

VenuePLoS Pathogens · 2014
Typereview
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsUniversité de Sherbrooke
FundersFonds de Recherche du Québec - SantéCanadian Institutes of Health ResearchInstitut National de la Santé et de la Recherche Médicale
KeywordsRNABiologyTranslation (biology)BacteriaRiboswitchGeneticsAdaptation (eye)Regulation of gene expressionAntibiotic resistanceGeneCell biologyNon-coding RNAMessenger RNAComputational biology

Abstract

fetched live from OpenAlex

What Are Small Regulatory RNAs?An increasing number of RNAs have been recently shown to possess regulatory functions similar to those of proteins.In bacteria, these regulatory RNAs are usually noncoding and are short size (50-500 nts) transcripts that are often referred to as small RNAs (sRNAs) [1,2].These sRNAs are synthesized under specific environmental conditions and play a major role in the regulation of various cellular processes (Figure 1) [3].Most of them act via an imperfect antisense base-pairing with their target mRNAs.Duplex formation usually results in inhibition or stimulation of mRNA target translation.In some cases, sRNAs can also bind proteins to influence their activities (e.g., 6S RNA).Compared to protein-dependent mechanisms, sRNAs require less energy, act faster and also allow a coordinated regulation of several targets.Owing to these characteristics, sRNAs allow efficient adaptation of bacteria to their ever-changing environment.Therefore, the possibility exists that some sRNAs may be involved in antibiotic resistance.In this report, we provide evidence that illustrates the growing number of sRNAs that influence bacterial resistance to antibiotics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.264
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2014
Admission routes2
Has abstractyes

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