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Record W2015354036 · doi:10.1139/x06-260

Combining microsatellites, growth, and adaptive traits for managing in situ genetic resources of<i>Eucalyptus urophylla</i>

2007· article· en· W2015354036 on OpenAlexvenueno aff
Vincent Tripiana, Michaël Bourgeois, Daniel Verhaegen, Philippe Vigneron, Jean‐Marc Bouvet

Bibliographic record

VenueCanadian Journal of Forest Research · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersCentre de Coopération Internationale en Recherche Agronomique pour le Développement
KeywordsBiologyMicrosatelliteGenetic diversityGenetic variationEucalyptusEx situ conservationGene flowNatural selectionGenetic driftFixation indexLoss of heterozygosityBotanyEvolutionary biologyPopulationEcologyGeneticsAlleleGeneEndangered speciesDemography

Abstract

fetched live from OpenAlex

Genetic diversity and structure of 17 populations representative of the natural range of Eucalyptus urophylla S.T. Blake in Indonesia were analysed with 10 microsatellite markers. Two provenance and progeny trials, using the same populations, were established in the Republic of the Congo and analysed for growth and survival at 37 months. Observed microsatellite heterozygosity (Ho) was moderate to high within populations (Ho= 0.51–0.72). The index of fixation (FIS) was significantly different from zero for all populations (FIS= 0.13–0.31) and possibly resulted from a Wahlund effect. The differentiation parameter was low (FST= 0.04) and not significantly different from zero, which can be explained by effective gene flow via pollen. The genetic variances within and among provenances for survival and growth traits were significantly different from zero, representing 13%–23% and 14%–50% of the total variation, respectively. The differentiation between populations based on quantitative traits was marked (QST= 0.07–0.33). A negative relationship between altitude of the seed source and its performance in the Congo was observed (R2= 0.59–0.67) and could be explained by the effect of natural selection along the altitudinal gradient. This marked differentiation for quantitative traits despite high apparent gene flow results in a clinal variation, which suggests the use of altitude of seed source as an important principle for in situ or ex situ management of E. urophylla genetic resources.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.274
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations35
Published2007
Admission routes1
Has abstractyes

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