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Disease Behavior in Children with Crohn's Disease: The Effect of Disease Duration, Ethnicity, Genotype and Phenotype

2006· article· en· W2015528790 on OpenAlexaff
Ron Shaoul, Amir Karban, Shimon Reif, B Weiß, Raanan Shamir, Jonathan Halevi, Silver E Leshinsky, Alan D. Levine

Bibliographic record

VenueJournal of Pediatric Gastroenterology and Nutrition · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsPediatric Oncology Group
Fundersnot available
KeywordsMedicineDiseaseGenotypeNOD2CohortInflammatory bowel diseaseInternal medicineCrohn's diseaseGastroenterologyAge of onsetGeneGeneticsBiology

Abstract

fetched live from OpenAlex

Objectives: The Vienna classification divides Crohn's disease (CD) into 3 behavior groups, inflammatory, stricturing, and penetrating types. The aim of our study was to evaluate the effect of genotype and phenotype on disease behavior in pediatric CD. Study design: Evaluation of 128 pediatric onset CD was followed by analysis of 235 pediatric and adult onset CD patients, all with at least two years of follow-up (mean 4.9 and 6.4 years respectively). Phenotype, ethnicity, and disease duration were recorded. Patients were genotyped for polymorphisms in the NOD2/CARD15 gene. Results: Patients under the age of 9 had more colonic involvement. Pediatric disease at end of follow-up was classified as inflammatory (78%), penetrating (6%) and stricturing (17%), while 31% had perianal disease. Duration of follow-up was associated with more stricturing and penetrating disease. NOD2 was associated with ileal disease. There was no association between mean age of onset and NOD2/CARD15, or one of these with disease behavior. These observations were identical in the final mixed adult pediatric cohort. Sephardic Jewish origin was inversely correlated with inflammatory behaviour (p=0.006), independent of NOD2 genotype. Conclusions: Duration of disease and ethnicity, irrespective of NOD2/CARD15 genotype, were the only predictors for penetrating or stricturing disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.002
GPT teacher head0.207
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2006
Admission routes1
Has abstractyes

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Same venueJournal of Pediatric Gastroenterology and NutritionSame topicInflammatory Bowel DiseaseFrench-language works237,207