Hybridization and the porous genome: patterns of isolation and introgression in manakins
Bibliographic record
Abstract
How does one species become two? What is the relative importance of selection vs. drift? How many genes are involved, what are their effect sizes and where are they located in the genome? The answers to these questions will inevitably vary from one species to another, but by addressing these questions in a diverse array of taxa, we will gradually piece together a more complete picture of how evolution works. In this issue of Molecular Ecology, Parchman et al. () have approached these questions by studying the genomic basis of differentiation along a hybrid zone between two Central American bird species, the golden-collared (Manacus vitellinus) and white-collared (Manacus candei) manakins (see Fig. ). Their work presents an interesting window into the evolution of this hybrid zone using novel analysis tools and a nice example of how to approach the study of population genomics in nonmodel organisms. [Figure: see text].
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.002 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.001 | 0.002 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.005 | 0.003 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".