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BrainPrint: A discriminative characterization of brain morphology

2015· article· en· W2017436068 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueNeuroImage · 2015
Typearticle
Languageen
FieldMathematics
TopicMorphological variations and asymmetry
Canadian institutionsnot available
FundersNational Institute of Biomedical Imaging and BioengineeringNational Institute of Mental HealthNational Center for Complementary and Integrative HealthNational Institute on AgingNational Cancer Institute, Cairo UniversityAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General HospitalNational Institutes of HealthNational Cancer InstituteServierNIH Blueprint for Neuroscience ResearchFujirebio EuropeEisaiBiogenPfizerCanadian HIV Trials Network, Canadian Institutes of Health ResearchBioClinicaSynarcAssociation France AlzheimerNational Institute of Neurological Disorders and StrokeIXICOTakeda Pharmaceutical CompanyMedpaceNational Center for Research ResourcesF. Hoffmann-La RocheMassachusetts General HospitalNovartis Pharmaceuticals CorporationU.S. Department of DefenseEli Lilly and CompanyBristol-Myers SquibbGE HealthcareAlzheimer's Disease Neuroimaging InitiativeNational Center for Complementary and Alternative MedicineMeso Scale DiagnosticsJohnson and Johnson Pharmaceutical Research and DevelopmentHarvard NeuroDiscovery CenterAlzheimer's Drug Discovery FoundationMerckAlzheimer's AssociationFoundation for the National Institutes of HealthGenentechAlexander von Humboldt-StiftungCentre d'Imagerie BioMédicaleEllison Medical Foundation
KeywordsDiscriminative modelArtificial intelligenceBrain morphometryComputer sciencePattern recognition (psychology)Representation (politics)Similarity (geometry)Characterization (materials science)Polygon meshMagnetic resonance imagingImage (mathematics)MedicinePhysics

Abstract

fetched live from OpenAlex

We introduce BrainPrint, a compact and discriminative representation of brain morphology. BrainPrint captures shape information of an ensemble of cortical and subcortical structures by solving the eigenvalue problem of the 2D and 3D Laplace-Beltrami operator on triangular (boundary) and tetrahedral (volumetric) meshes. This discriminative characterization enables new ways to study the similarity between brains; the focus can either be on a specific brain structure of interest or on the overall brain similarity. We highlight four applications for BrainPrint in this article: (i) subject identification, (ii) age and sex prediction, (iii) brain asymmetry analysis, and (iv) potential genetic influences on brain morphology. The properties of BrainPrint require the derivation of new algorithms to account for the heterogeneous mix of brain structures with varying discriminative power. We conduct experiments on three datasets, including over 3000 MRI scans from the ADNI database, 436 MRI scans from the OASIS dataset, and 236 MRI scans from the VETSA twin study. All processing steps for obtaining the compact representation are fully automated, making this processing framework particularly attractive for handling large datasets.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.563
Threshold uncertainty score0.312

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.103
GPT teacher head0.330
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it