MétaCan
Menu
Back to cohort
Record W2018519148 · doi:10.1002/sita.200600120

Integrin signaling in early sea urchin development

2007· article· en· W2018519148 on OpenAlexaff
Robert D. Burke, Elizabeth Brothers, Andrea Matviw

Bibliographic record

VenueSignal Transduction · 2007
Typearticle
Languageen
FieldMedicine
TopicCell Adhesion Molecules Research
Canadian institutionsUniversity of Victoria
Fundersnot available
KeywordsIntegrinCell biologyBiologySignal transductionBlastocoelSea urchinCD49cBlastulaCollagen receptorEmbryogenesisReceptorBiochemistryEmbryo

Abstract

fetched live from OpenAlex

Abstract The eggs and cleavage stage embryos of many animals express integrins and signal transduction components, yet comparatively little is known of the signaling complexes formed or the role of integrin signaling in early development. Genomic approaches have revealed the complement of integrin signaling components expressed in early sea urchin development. We review what is known about the distribution and function of integrins, integrin ligands, and integrin signal transduction proteins expressed during this critical phase of development. Immediately after fertilization integrins are expressed on the apical surface of the egg where the receptors interact with several potential ligands in the hyaline layer. The apical integrin complex is essential for reorganization of the egg cortex. During cleavage the blastocoel forms and a second integrin complex forms on the basal surface of blastomeres interacting with basal lamina components of the extracellular matrix. The integrin subunits of the apical and basal complexes differ and localization data indicate the apical and basal complexes may contain different scaffolding proteins and different kinases. We propose that there are two independent integrin‐based signaling complexes formed during cleavage and blastula formation that may have distinct and essential functions in early development. The sea urchin is an excellent model for studies of these pathways and a number of approaches are available to determine their roles in early development.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.306
Teacher spread0.276 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2007
Admission routes1
Has abstractyes

Explore more

Same venueSignal TransductionSame topicCell Adhesion Molecules ResearchFrench-language works237,207