MétaCan
Menu
Back to cohort
Record W2023126517 · doi:10.1139/x05-234

Population differentiation among three species of white oak in northeastern Illinois

2006· article· en· W2023126517 on OpenAlexvenueno aff
Kathleen J. Craft, Mary V. Ashley

Bibliographic record

VenueCanadian Journal of Forest Research · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersNational Eye InstituteUniversity of Illinois at Chicago
KeywordsBiologyIntraspecific competitionInterspecific competitionMicrosatellitePopulationGenetic distanceGenetic structureGenetic diversityGenetic variationWhite (mutation)BotanyEvolutionary biologyAlleleEcologyGeneticsGene

Abstract

fetched live from OpenAlex

We used microsatellite DNA analysis to examine population differentiation among three species of white oak, Quercus alba L., Quercus bicolor Willd., and Quercus macrocarpa Michx., occurring in both pure and mixed stands in northeastern Illinois. Using individual-based Bayesian clustering or principal components analyses, no strong genetic groupings of individuals were detected. This suggests that the three species do not represent distinct and differentiated genetic entities. Nevertheless, traditional approaches where individuals are pre-assigned to species and populations, including F statistics, allele frequency analysis, and Nei's genetic distance, revealed low, but significant genetic differentiation. Pairwise F statistics showed that some intraspecific comparisons were as genetically differentiated as interspecific comparisons, with the two populations of Q. alba exhibiting the highest level of genetic differentiation (θ = 0.1156). A neighbor-joining tree also showed that the two populations of Q. alba are distinct from one another and from the two other species, while Q. bicolor and Q. macrocarpa were genetically more similar. Pure stands of Q. macrocarpa did not show a higher degree of genetic differentiation than mixed stands.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.951
Threshold uncertainty score0.098

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.253
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations32
Published2006
Admission routes1
Has abstractyes

Explore more

Same venueCanadian Journal of Forest ResearchSame topicGenetic diversity and population structureFrench-language works237,207