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Record W2023884097 · doi:10.1266/ggs.87.277

Corrigendum: A novel composite retrotransposon derived from or generated independently of the SVA (SINE/VNTR/<i>Alu</i>) transposon has undergone proliferation in gibbon genomes [Genes Genet. Syst. (2012) 87, p. 181–190]

2012· erratum· en· W2023884097 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueGenes & Genetic Systems · 2012
Typeerratum
Languageen
FieldAgricultural and Biological Sciences
TopicChromosomal and Genetic Variations
Canadian institutionsnot available
Fundersnot available
KeywordsRetrotransposonGenomeBiologyComputational biologyTransposable elementGeneticsData sharingWhole genome sequencingLibrary scienceGenealogyGeneComputer scienceHistoryMedicine

Abstract

fetched live from OpenAlex

This paper was published in error prior to the publication of the gibbon genome sequence assembly and analysis by the Gibbon Genome Analysis Consortium. The genome sequence is provided to the public pre-publication to allow research to proceed faster than the genome analysis would allow These sequences are typically covered by the Fort Lauderdale (1) and later Toronto (2) agreements whereby the data users ask permission to use the pre-publication data and cite the appropriate source. The authors of the paper did not understand these rules correctly, and did not seek permis-sion to use the pre-publication data, which led to the erroneous publication of the paper. The authors apologize to the Gibbon Genome Analysis Consortium for the error, and state here that the paper should be regarded as an invalid publication until the paper describing the gibbon genome sequence assembly and analysis is published by the Consortium. October 23, 2012 Akihiko Koga, Corresponding author Citations: (1) Sharing Data from Large-scale Biological Research Projects: A System of Tripartite Responsibility Report of a meeting organized by the Wellcome Trust and held on 14–15 January 2003 at Fort Lauderdale, USA. (2) Toronto International Data Release Workshop Authors. (2009) Prepublication data sharing Nature 461, 168–170.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesMeta-epidemiology (narrow)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.941
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0000.002
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0020.000
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.211
Teacher spread0.175 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it