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Record W2025485735 · doi:10.1002/qsar.200810166

QSAR Studies of HEPT Derivatives Using Support Vector Machines

2009· article· en· W2025485735 on OpenAlexaff
Rachid Darnag, Andreea R. Schmitzer, Yamina Belmiloud, Didier Villemin, Abdellah Jarid, Abderrahman Chait, Maria Seyagh, Driss Cherqaoui

Bibliographic record

VenueQSAR & Combinatorial Science · 2009
Typearticle
Languageen
FieldMedicine
TopicHIV/AIDS drug development and treatment
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsSupport vector machineThymineQuantitative structure–activity relationshipKernel (algebra)Steric effectsArtificial neural networkChemistryMolecular descriptorHuman immunodeficiency virus (HIV)Artificial intelligenceBiological systemComputer scienceCombinatorial chemistryStereochemistryMathematicsBiologyBiochemistryVirology

Abstract

fetched live from OpenAlex

Abstract Human Immunodeficiency Virus type 1 reverse transcriptase is an important target for chemotherapeutic agents against the AIDS disease. 1‐[2‐Hydroxyethoxy‐methyl]‐6‐(phenylthio) thymine] derivatives are potent nonnucleoside reverse transcriptase inhibitors. In the present work, quantitative structure‐activity relationship analysis for a set of 79 HEPT derivatives has been investigated by means of support vector machines. The relationships between structure and activity were examined quantitatively using descriptors encoding the steric, hydrophobic, electronic and structural features of 1‐[2‐hydroxyethoxy‐methyl]‐6‐(phenylthio) thymine] derivatives. The performance and predictive capability of support vector machines method are investigated and compared with other methods such as artificial neural network and multiple linear regression methods. The obtained results indicate that the support vector machines model with the kernel radial basis function can be employed as a forceful tool for quantitative structure‐activity relationship studies. The contribution of each descriptor to the structure‐activity relationships was evaluated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.363
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2009
Admission routes1
Has abstractyes

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