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Abstract A248: Integrated therapeutic antibody development at the National Research Council of Canada.

2013· article· en· W2026797869 on OpenAlexaffabout
María Jaramillo, Anne Marcil, Yves Durocher, Rénald Gilbert, Alaka Mullick, John F. Kelly, Maureen D. O'Connor‐McCourt, Bernard Massie

Bibliographic record

VenueMolecular Cancer Therapeutics · 2013
Typearticle
Languageen
FieldMedicine
TopicMonoclonal and Polyclonal Antibodies Research
Canadian institutionsNational Research Council Canada
Fundersnot available
KeywordsAntibodyMonoclonal antibodyComputational biologyImmunizationPanning (audio)clone (Java method)BiologyImmunologyGeneGenetics

Abstract

fetched live from OpenAlex

Abstract Advances in genomics and antibody engineering have enabled the development of an innovative class of targeted therapies, namely therapeutic antibodies, for the treatment of diseases with significant unmet medical needs such as cancer. Therapeutic antibodies represent one of the largest and fastest growing classes of medications. The NRC has built a chain of cutting edge technology platforms needed to discover, engineer and produce therapeutic monoclonal antibodies with the goal of partnering with industrial and academic centers to advance research and development of this important class of therapeutics. Target Identification- To establish and validate the technology platforms, tumor targets for candidate therapeutic antibody production were identified using a combination of proteomics, transcriptomics and bioinformatic approaches. Out of these lists, approximately 40 tumor targets were selected (known therapeutic antibody targets were excluded), and over 3,000 antibodies of mouse and camelid origin were then generated against these targets. Antibody generation- Once identified, the recombinant target protein of interest was produced using the NRC's high efficiency cell expression platforms in CHO or HEK293 cells and purified protein was used for immunization or panning. For targets which were difficult to express or purify, the capabilities for direct immunization with plasmid DNA constructs were utilized. Clone selection was carried out by ELISA and typically 50 antibodies/target were identified for further characterization. Antibody characterization and validation- The affinities of the antibodies were determined by SPR biosensor analysis. Reverse phase protein arrays and Western blot analysis on protein mixes and cell line extracts allowed the characterization of the specificity of the antibodies. SPR-based epitope binning was carried out in order to characterize the diversity of the antibody collections and to enable the selection of representative antibodies from each epitope bin for further analysis. Select antibodies were assessed in appropriate cell-based assays for prioritization based on function. Therapeutic antibody Optimization, Bioprocessing and Biomanufacturing- Therapeutic antibodies selected for development can be further optimized using antibody engineering technologies to humanize them and/or modify their glycosylation patterns to improve their effector function, pharmacokinetics, solubility and stability as well as reduce their immunogenicity. The NRC platform for large scale protein production has the capacity to manufacture up to 500 g of commercial grade antibody using serum free, low endotoxin media in a cGMP certified CHO cell line which is ready for transfer to CMOs or other industrial partners. Citation Information: Mol Cancer Ther 2013;12(11 Suppl):A248. Citation Format: Maria L. Jaramillo, Anne Marcil, Yves Durocher, Renald Gilbert, Alaka Mullick, John Kelly, Maureen O'Connor-McCourt, Bernard Massie. Integrated therapeutic antibody development at the National Research Council of Canada. [abstract]. In: Proceedings of the AACR-NCI-EORTC International Conference: Molecular Targets and Cancer Therapeutics; 2013 Oct 19-23; Boston, MA. Philadelphia (PA): AACR; Mol Cancer Ther 2013;12(11 Suppl):Abstract nr A248.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.570
Threshold uncertainty score0.866

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.002
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0030.001
Scholarly communication0.0030.001
Open science0.0030.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.1290.048

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.150
GPT teacher head0.385
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2013
Admission routes2
Has abstractyes

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