MétaCan
Menu
Back to cohort
Record W2030209412 · doi:10.5539/ijb.v1n2p81

Transcription and Expression of Major VP Gene of Bombyx Mori Parvo-like Virus

2009· article· en· W2030209412 on OpenAlexvenueno aff
Jinsong Cheng, Qin Yao, Meng Lv, Chen Sun, Yuanqing He, Keping Chen

Bibliographic record

VenueInternational Journal of Biology · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicViral Infectious Diseases and Gene Expression in Insects
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyGeneBombyx moriMolecular biologyDNAVirusCoding regionVirologyGene expressionViral structural proteinGeneticsViral replicationViral entry

Abstract

fetched live from OpenAlex

The Bombyx mori parvo-like virus (China Zhenjiang isolate), termed as BmDNV-Z, replicates only in host’s midgutcolumnar cells and causes flacherie disease. The viral genome is composed of two sets of different single-strandedlinear DNA molecules, Viral DNA 1(VD1) and Viral DNA 2(VD2). Here we cloned the major VP gene from theplasmid contained viral DNA fragments. The gene consists of 1500 nucleotides and the deduced protein has 499 aminoacid residues, with the predicted molecular weight of 54934.24Da, isoelectric point of 6.73. The coding sequence wasinserted into expression plasmid vector pET-30a and expressed in Escherichia coli BL21 (DE3) under the induciblepromoter LacZ. The expressed product was detected by Western blotting with anti-His antibody. Interestingly, there arefour laddered band instead of one. We speculated that this virus may use leaky scanning mechanism to express fourproteins in one ORF. And we investigated the major VP gene transcriptional time phase in susceptible silkworm throughreal time quantitative PCR (qPCR). The result showed that the mRNA level of VP gene increased greatly after 24 hourspost inoculation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.281
Teacher spread0.272 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2009
Admission routes1
Has abstractyes

Explore more

Same venueInternational Journal of BiologySame topicViral Infectious Diseases and Gene Expression in InsectsFrench-language works237,207