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Record W2032453810 · doi:10.1096/fj.12-214924

Regulation of co‐ and post‐translational myristoylation of proteins during apoptosis: interplay of <i>N</i> ‐myristoyltransferases and caspases

2012· article· en· W2032453810 on OpenAlexafffund
Maneka A. Perinpanayagam, Erwan Beauchamp, Dale D. O. Martin, Jacky Y. Sim, Megan C. Yap, Luc G. Berthiaume

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Kinase Regulation and GTPase Signaling
Canadian institutionsUniversity of Alberta
FundersCanadian Institutes of Health Research
KeywordsApoptosisMyristoylationCaspaseCytosolCell biologyCleavage (geology)BiologyCaspase 7Molecular biologyProgrammed cell deathBiochemistryEnzymePhosphorylation

Abstract

fetched live from OpenAlex

Myristoylation occurs cotranslationally on nascent proteins and post‐translationally during apoptosis after caspase cleavages expose cryptic myristoylation sites. We demonstrate a drastic change in the myristoylated protein proteome in apoptotic cells, likely as more substrates are revealed by caspases. We show for the first time that both N ‐myristoyltransferases (NMTs) 1 and 2 are cleaved during apoptosis and that the caspase‐3‐ or ‐8‐mediated cleavage of NMT1 at Asp‐72 precedes the cleavage of NMT2 by caspase‐3 mainly at Asp‐25. The cleavage of NMTs did not significantly affect their activity in apoptotic cells until the 8 h time point. However, the cleavage of the predominantly membrane bound NMT1 (64%) removed a polybasic domain stretch and led to a cytosolic relocalization (&gt;55%), whereas predominantly cytosolic NMT2 (62%) relocalized to membranes when cleaved (&gt;80%) after the removal of a negatively charged domain. The interplay between caspases and NMTs during apoptosis is of particular interest since caspases may not only control the rates of substrate production but also their myristoylation rate by regulating the location and perhaps the specificity of NMTs. Since apoptosis is often suppressed in cancer, the reduced caspase activity seen in cancer cells might also explain the higher NMT levels observed in many cancers.—Perinpanayagam, M. A., Beauchamp, E., Martin, D. D. O., Sim, J. Y. W., Yap, M. C., Berthiaume, L. G. Regulation of co‐ and post‐translational myristoylation of proteins during apoptosis: interplay of N ‐myristoyltransferases and caspases. FASEB J. 27, 811–821 (2013). www.fasebj.org

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.068
Threshold uncertainty score0.264

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.240
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations34
Published2012
Admission routes2
Has abstractyes

Explore more

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