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Karyotypic Evolution of the Common and Silverleaf Sunflower Genomes

2009· article· en· W2034328878 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Plant Genome · 2009
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSunflower and Safflower Cultivation
Canadian institutionsUniversity of British Columbia
FundersGeorgia Research Alliance
KeywordsBiologySyntenyGeneticsGenomeChromosomal rearrangementHelianthus annuusChromosomeChromosomal translocationGene duplicationKaryotypeGeneSunflower

Abstract

fetched live from OpenAlex

Silverleaf sunflower ( Helianthus argophyllus Torrey and Gray) has been an important source of favorable alleles for broadening genetic diversity and enhancing agriculturally important traits in common sunflower ( H. annuus L.), and, as the closest living relative of H. annuus , provides an excellent model for understanding how apparently maladaptive chromosomal rearrangements became established in this genus. The genomes of H. annuus and H. argophyllus were comparatively mapped to identify syntenic and rearranged chromosomes and develop genomic blueprints for predicting the impact of chromosomal rearrangements on interspecific gene flow. Syntenic chromosomal segments were identified and aligned using 131 orthologous DNA marker loci distributed throughout the H. annuus genome (299 DNA marker loci were mapped in H. argophyllus ). We identified 28 colinear chromosomal segments, 10 colinear chromosomes, and seven chromosomal rearrangements (five non‐reciprocal translocations and two inversions). Four H. argophyllus chromosomes carrying non‐reciprocal translocations apparently arose from the duplication of two chromosomes, and three H. argophyllus chromosomes apparently arose from end‐to‐end or end‐to‐opposite‐end fusions of chromosomes or chromosome segments. Chromosome duplication may reduce the initial fitness costs of chromosomal rearrangements, thereby facilitating their establishment. Despite dramatic differences in chromosome architecture, a significant fraction of the H. argophyllus genome appears to be accessible for introgression into H. annuus .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.951
Threshold uncertainty score0.167

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.184
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it