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Record W2036169669 · doi:10.1097/ico.0000000000000389

Identification of Corneal Neovascularization–Related Long Noncoding RNAs Through Microarray Analysis

2015· article· en· W2036169669 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueCornea · 2015
Typearticle
Languageen
FieldMedicine
TopicCorneal Surgery and Treatments
Canadian institutionsCAE (Canada)
Fundersnot available
KeywordsKEGGBiologyLong non-coding RNAMicroarrayComputational biologyGeneGene expression profilingMicroarray analysis techniquesGene expressionDownregulation and upregulationCell biologyMolecular biologyGeneticsGene ontology

Abstract

fetched live from OpenAlex

PURPOSE: To reveal the role of long noncoding RNAs (lncRNAs) in corneal neovascularization (CN). METHODS: We established a murine CN model and performed lncRNA expression profiling to identify differentially expressed lncRNAs between normal and vascularized corneas. Based on Pearson correlation analysis, an lncRNA/mRNA coexpression network was constructed. Gene ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses of lncRNA-coexpressed mRNAs were conducted to determine the related biological modules and pathological pathways. Real-time polymerase chain reactions were carried out to detect the expression pattern of lncRNA in the clinical samples. RESULTS: A total of 154 differentially expressed lncRNAs were identified between vascularized and normal corneas, including 60 downregulated lncRNAs and 94 upregulated lncRNAs. GO enrichment analysis of lncRNA-coexpressed mRNAs indicated that the biological modules were correlated with extracellular region, DNA binding, and immune response. KEGG pathway analysis indicated that "pathways in cancer" was the most enriched signaling pathway. Moreover, the human ortholog of NR_033585 and lincRNA:chr8:129102060-129109035 reverse strand was found to be differentially expressed between vascularized and avascular corneas. CONCLUSIONS: This study provides a novel insight into CN pathogenesis. The intervention of dysregulated lncRNAs may become potential targets for the prevention and treatment of ocular vascular diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.090
Threshold uncertainty score0.531

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.291
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it