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Record W2038665119 · doi:10.1074/jbc.m410867200

P–O Bond Destabilization Accelerates Phosphoenzyme Hydrolysis of Sarcoplasmic Reticulum Ca2+-ATPase

2004· article· en· W2038665119 on OpenAlexfundno aff
Andreas Barth, Natalya Bezlyepkina

Bibliographic record

VenueJournal of Biological Chemistry · 2004
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIon channel regulation and function
Canadian institutionsnot available
FundersDeutsche ForschungsgemeinschaftMcMaster University
KeywordsChemistryPhosphateCrystallographyStereochemistryHydrolysisMoietyATP hydrolysisATPaseNuclear magnetic resonance spectroscopyEnzymeOrganic chemistry

Abstract

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The phosphate group of the ADP-insensitive phosphoenzyme (E2-P) of sarcoplasmic reticulum Ca2+-ATPase (SERCA1a) was studied with infrared spectroscopy to understand the high hydrolysis rate of E2-P. By monitoring an autocatalyzed isotope exchange reaction, three stretching vibrations of the transiently bound phosphate group were selectively observed against a background of 50,000 protein vibrations. They were found at 1194, 1137, and 1115 cm–1. This information was evaluated using the bond valence model and empirical correlations. Compared with the model compound acetyl phosphate, structure and charge distribution of the E2-P aspartyl phosphate resemble somewhat the transition state in a dissociative phosphate transfer reaction; the aspartyl phosphate of E2-P has 0.02 Å shorter terminal P–O bonds and a 0.09 Å longer bridging P–O bond that is ∼20% weaker, the angle between the terminal P–O bonds is wider, and –0.2 formal charges are shifted from the phosphate group to the aspartyl moiety. The weaker bridging P–O bond of E2-P accounts for a 1011–1015-fold hydrolysis rate enhancement, implying that P–O bond destabilization facilitates phosphoenzyme hydrolysis. P–O bond destabilization is caused by a shift of noncovalent interactions from the phosphate oxygens to the aspartyl oxygens. We suggest that the relative positioning of Mg2+ and Lys684 between phosphate and aspartyl oxygens controls the hydrolysis rate of the ATPase phosphoenzymes and related phosphoproteins. The phosphate group of the ADP-insensitive phosphoenzyme (E2-P) of sarcoplasmic reticulum Ca2+-ATPase (SERCA1a) was studied with infrared spectroscopy to understand the high hydrolysis rate of E2-P. By monitoring an autocatalyzed isotope exchange reaction, three stretching vibrations of the transiently bound phosphate group were selectively observed against a background of 50,000 protein vibrations. They were found at 1194, 1137, and 1115 cm–1. This information was evaluated using the bond valence model and empirical correlations. Compared with the model compound acetyl phosphate, structure and charge distribution of the E2-P aspartyl phosphate resemble somewhat the transition state in a dissociative phosphate transfer reaction; the aspartyl phosphate of E2-P has 0.02 Å shorter terminal P–O bonds and a 0.09 Å longer bridging P–O bond that is ∼20% weaker, the angle between the terminal P–O bonds is wider, and –0.2 formal charges are shifted from the phosphate group to the aspartyl moiety. The weaker bridging P–O bond of E2-P accounts for a 1011–1015-fold hydrolysis rate enhancement, implying that P–O bond destabilization facilitates phosphoenzyme hydrolysis. P–O bond destabilization is caused by a shift of noncovalent interactions from the phosphate oxygens to the aspartyl oxygens. We suggest that the relative positioning of Mg2+ and Lys684 between phosphate and aspartyl oxygens controls the hydrolysis rate of the ATPase phosphoenzymes and related phosphoproteins. Phosphorylation is one of the fundamental regulatory mechanisms in biology (1Mildvan A.S. Proteins. 1997; 29: 401-416Crossref PubMed Scopus (255) Google Scholar). It also governs the catalytic mechanism of the sarcoplasmic reticulum Ca2+-ATPase (SERCA1) (2Hasselbach W. Makinose M. Biochem. Z. 1961; 333: 518-528PubMed Google Scholar), where it controls the ordered sequence of catalytic steps to ensure the efficiency of the overall catalytic reaction. Here we study one of the ATPase phosphoenzyme intermediates by monitoring an enzyme-catalyzed isotopic exchange reaction at the phosphate group with infrared spectroscopy. The result is an infrared spectrum at “atomic resolution” in a crowded spectral region. It observes selectively the transiently bound phosphate group, a group that cannot be studied by site-directed mutagenesis. Our approach can be extended to other phosphoproteins and reveals here the molecular cause of an important property of the phosphoenzyme studied. The Ca2+-ATPase (2Hasselbach W. Makinose M. Biochem. Z. 1961; 333: 518-528PubMed Google Scholar) pumps two Ca2+ ions against a concentration gradient across the sarcoplasmic reticulum membrane, which relaxes a flexed muscle (for reviews see Refs. 3Andersen J.P. Biochim. Biophys. Acta. 1989; 988: 47-72Crossref PubMed Scopus (99) Google Scholar, 4Hasselbach W. Bonting S.L. De Pont J.J.H.H.M. Membrane Transport. Elsevier, Amsterdam1981: 183-208Google Scholar, 5Inesi G. de Meis L. Martonosi A. 2nd Ed. The Enzymes of Biological Membranes. 3. Plenum Press, New York1985: 157-191Google Scholar, 6Martonosi A. Kracke G. Taylor K.A. Dux L. Peracchia C. Soc. Gen. Phys. Ser. Google Scholar, Biochim. Biophys. Acta. 1997; PubMed Scopus Google Scholar, A. Biochem. PubMed Scopus Google Scholar). The for is by the which the ATPase at to at two and E2-P. The Ca2+ is with the from to E2-P. phosphoenzymes catalytic the phosphoenzyme with to the phosphoenzyme E2-P with This of catalytic the efficiency of the the of is that the by is Ca2+ is Ca2+ E2-P the model compound acetyl phosphate in The for E2-P hydrolysis is between and the PubMed Scopus Google Scholar, A. de Meis L. Biochim. Biophys. Acta. PubMed Scopus Google Scholar, de Meis L. G. PubMed Google Scholar, W. Z. PubMed Scopus Google Scholar), that of acetyl phosphate is G. Soc. 1961; Scopus Google Scholar). This of the reaction by the is for the of the and for the of Ca2+ from the the of the phosphate group is important in the It has found to in the transition from to E2-P Meis L. Scopus Google Scholar, PubMed Scopus Google Scholar), and to for an hydrolysis rate of E2-P with Meis L. PubMed Scopus Google in Meis L. Biochim. Biophys. Acta. 1989; PubMed Scopus Google Scholar). The molecular mechanism of We were in the of the phosphate group controls catalytic and infrared spectroscopy to study the phosphate group of E2-P in spectroscopy has for the of protein C. A. PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, W. Biochem. PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, C. PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, A. C. Biophys. PubMed Scopus Google Scholar) it of and bond at a of that that of and and of Biological New Scholar). the of infrared spectroscopy the of isotopic has to a group in a protein PubMed Scopus Google Scholar, PubMed Scopus Google Scholar). of the infrared of a group are shifted with to of the group and can be in the is to a group in the the of group be the of other the of protein in is the of infrared where the reaction of is in the infrared We a compound of from a for from valence A. W. W. PubMed Scopus Google in A. C. PubMed Scopus Google Scholar). By the between the infrared and of the reaction, are that the of the of Here we and to selectively the phosphate group of from the to the which a E2-P phosphoenzyme This phosphoenzyme an isotopic exchange with at the phosphate oxygens PubMed Scopus Google Scholar, PubMed Google Scholar), which can be observed with infrared spectroscopy. were in the Ca2+-ATPase A. W. Biophys. PubMed Scopus Google Scholar, A. PubMed Scopus Google Scholar) and PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, PubMed Scopus Google Scholar). They were evaluated by a of with and This approach has to be of for the E2-P phosphate vibrations A. PubMed Scopus Google Scholar). The approach here is to of a protein with the of an autocatalyzed isotopic exchange A. PubMed Scopus Google Scholar). we a spectrum between and E2-P in a We selectively three stretching vibrations of the phosphate group of a protein with 50,000 of The a shift of from the P–O bond that protein and phosphate to the terminal P–O This the to the protein and hydrolysis of E2-P. The approach here to study one of the Ca2+-ATPase phosphoenzymes can be extended to other with the of to infrared were at and the were A. W. W. PubMed Scopus Google Scholar). They Ca2+ of the were to an protein concentration using the A. W. Biophys. PubMed Scopus Google Scholar). of with Phys. Scopus Google Scholar) a fundamental for the stretching for which for is with and the and stretching vibrations of the terminal P–O The of the stretching is by a of is The fundamental is the of the phosphate group the and stretching vibrations of the terminal P–O bonds Phys. Scopus Google Scholar). We the approach by to phosphate in by the fundamental where and are the of the terminal P–O bonds that we observed for the E2-P three for the three terminal P–O vibrations the of the stretching vibrations is by the of the E2-P phosphate The fundamental can be to the bond valence of P–O bonds using the Phys. Scopus Google where is the bond valence in and is the that to the fundamental where the phosphate group is in an the bond valence the bond valence of the three terminal P–O The bond valence of the bridging P–O bond was by the bond of the terminal P–O bonds from the valence of The bond valence of bonds bonds to the to the terminal phosphate oxygens was by the bond valence of the terminal P–O bonds from the valence of of with can be from bond in a that to the valence a A. 29: Scopus Google Scholar) for a of We The in The Press, Scholar) with the Google Scholar) to the bond valence Phys. Scopus Google where is the bond valence in is the bond of a bond with bond valence and is the bond of a bond with a bond valence of and are for a of bond A. 29: Scopus Google Scholar, Google and Å for P–O bonds Google Scholar). by Å from with the and from The in The Press, It be that the in for bond and bond be to be to three the are to the between acetyl phosphate and E2-P are of the E2-P phosphate group and acetyl phosphate group of acetyl of stretching vibrations fundamental bond valence valence of bond in a isotope exchange at the E2-P phosphate group, E2-P was by the of from in the of and the of and Ca2+ which are that E2-P and in A. W. W. PubMed Scopus Google Scholar, A. W. W. Biochim. Biophys. Acta. PubMed Scopus Google Scholar). This also a for E2-P that was to the phosphate group A. PubMed Scopus Google Scholar). the and were that the E2-P concentration is that the ATPase and to exchange between and phosphate group PubMed Google Scholar). and phosphate are an isotope exchange at the E2-P phosphate group is the of exchange that can be by infrared spectroscopy A. PubMed Scopus Google Scholar). isotope exchange were using in in in and in in in infrared of E2-P from in which the E2-P spectrum was and isotope The were isotope and the were The where which that the E2-P concentration is the and exchange of that are the result of the isotope exchange reaction. The in were with in and the spectrum is of by the at A. PubMed Scopus Google Scholar). of isotope exchange at the phosphate group, and the spectrum is The with isotope exchange are This is are caused by of the terminal P–O stretching vibrations which for vibrations of 50,000 protein vibrations. The isotope exchange in was in the the ATPase was with which and exchange with the spectrum a at which has in the spectrum isotope The of the in a and of the of the infrared the isotope exchange the and of were The are in and are isotope exchange the exchange with caused by and caused by The spectrum that the E2-P concentration is to a high in to caused by isotope other to the from isotope exchange the exchange was in the which to a spectrum with that in two of exchange for the isotope exchange at the in with the The also caused by the state hydrolysis of and A. W. W. PubMed Scopus Google Scholar, A. W. W. Biochim. Biophys. Acta. PubMed Scopus Google Scholar). The hydrolysis rate is to the concentration of which is to the of infrared the hydrolysis rate between The spectrum is the of and the spectrum is the of with hydrolysis. of the spectrum of from the spectrum of with hydrolysis was to the hydrolysis from the exchange spectrum The for was a spectrum where a hydrolysis is This the between and which that are with hydrolysis. the the relative of the cm–1. the in controls are in the two isotope exchange is the of of and are the in the spectrum and in the The spectrum an where the ATPase was by the of the Ca2+ that the between and in and are observed the of of and are and the ATPase is with in and are to isotope exchange at the phosphate oxygens of E2-P. are in where the isotope exchange spectrum of and that with hydrolysis of are The the property of the two in the between and cm–1. The property is for the of at and in the for hydrolysis of the exchange spectrum the property by the of the we to the for the from the property be isotope exchange in one of the We that isotope exchange is for the exchange it be for the the spectrum state hydrolysis of E2-P was in in for the exchange with the that isotope exchange is the the of the exchange the two in were and by This to the spectrum that are to isotope exchange and related to isotope The spectrum is in in spectrum are to and are found at 1194, 1137, and 1115 cm–1. of is are The are observed at and cm–1. We that exchange the at to and that at 1115 to cm–1. The at to 1115 where it the which the of the 1115 with the other two in the spectrum can be caused by of E2-P by a of a for the of isotope exchange we with which are in The the in exchange of that of and the the in exchange of that of of the in the of is the of is a is observed in the spectrum a in the This that the of is for for which can be a for exchange in an exchange The of in the spectrum of that exchange is to in The for isotope exchange can be to a spectrum for By the two the of and the of that of is This spectrum is a in and with the spectrum for exchange from The between is and the of to isotope The spectral of the phosphate are by the of in in isotope exchange were the for to isotope the was observed at the in the and of in in of the E2-P of the E2-P phosphate group at 1194, 1137, and 1115 cm–1. They are with the P–O stretching vibrations of the moiety. The spectral of the phosphate are from of the model acetyl phosphate in which two at that of the stretching at and that of the at cm–1. The of three for E2-P is to an the phosphate group that the The at has a phosphate A. PubMed Scopus Google Scholar) by with and It was observed at the of Mg2+ was in of Ca2+ was with Ca2+ Mg2+ and the at found here at and the catalytic which with to the ATPase and bound at E2-P is M. PubMed Google Scholar), has a the of one of the phosphate and to the aspartyl The is with with the Mg2+ with of the we an approach by Phys. Scopus Google Scholar) to P–O bond P–O bond and the of the bridging P–O The of can be the observed terminal P–O we P–O bond bond the bond valence of the bridging P–O bond can be the of bond is can be with bond and with The two can be related to the of the bridging P–O and can be to the in and the in rate that is by be to the angle between bridging P–O bond and terminal P–O to bond valence model is the of It an valence to which can be of the of in bond is a bond in valence which is a of bond and can be the of with a The valence that the of bond the The of valence bond was by L. Soc. Scopus Google Scholar) for bonds also to bonds A. 29: Scopus Google Scholar, A. Google Scholar). it to and bond valence and to a valence is a it to The in The Press, Scholar, Scopus Google Scholar). We the bond of the phosphate group in of E2-P and the bond of the terminal P–O bonds from the fundamental of E2-P and acetyl phosphate in The in and that the of E2-P the bond valence of the terminal P–O bonds by to a of bond by This in a of bond valence of the bridging P–O bond by to valence This that to the is in E2-P. the bond valence of the bridging P–O bond be in bridging P–O bond valence to a in bond valence of the bond the of the two bond has to the valence of the of P–O bond valence is by to the bridging in bond valence the bond valence to the of the bond the to valence of bond valence the bonds to the state where bond The bond valence of the bond of acetyl phosphate can be to be between and from in the infrared spectrum at A. W. Biophys. PubMed Scopus Google Scholar), between and bond Phys. Scopus Google Scholar, G. L. Scholar), and between bond and bond valence The in The Press, Scholar, Google Scholar). of E2-P and bond of bridging and terminal P–O bonds of E2-P and acetyl phosphate in with The terminal P–O bonds are shorter for E2-P by 0.02 the bridging P–O bond is longer by 0.09 This a of the bond that phosphate group and which be in the of the P–O of the we of the of bond of the bridging P–O bond of E2-P with to that of acetyl can be to bond valence Scopus Google Scholar). the bond of the bridging P–O bond of E2-P is of that of acetyl that the is to a P–O bond of of 2nd Ed. New Scholar), the bond in E2-P is by with to that of acetyl and bond are for the has found L. Scopus Google Scholar), where Å for P–O bonds Scopus Google Scholar). the bridging P–O bond of E2-P is found to be of that of acetyl a of the acetyl phosphate bond of the bond in E2-P is by with to that of acetyl between bond and bond can be by bond with bond and with bond The Phys. 1961; Scopus Google Scholar) with the for bonds between and Soc. Scopus Google Scholar) an of and is to the in They can be to the by the in the the terminal P–O bond of acetyl phosphate, a of is in with the of cm–1. The is to the and to the of the are to the of an which are for a G. and of 2nd Ed. Scholar). we that the of the terminal P–O bond of E2-P is to of the acetyl phosphate the P–O bond of the bond of E2-P is by can be with bond and Scholar), which a bond for the bridging P–O bond of for acetyl phosphate and of for which is and to of the acetyl phosphate bond The here P–O the of is by the of by a in bond by of the bridging P–O bond of E2-P with to acetyl phosphate to is the bond that is E2-P the of P–O bond to the be by a in a 1011–1015-fold in the hydrolysis This that P–O bond destabilization to the of phosphoenzyme hydrolysis. The is the observed the rate caused by the is by a of the in the The is observed for the model compound acetyl the of hydrolysis of acetyl phosphate by of by the for hydrolysis Meis L. PubMed Scopus Google Scholar). the rate is the the is by a of the are in the of the concentration is from to in the of the from to which the rate the by of which in a rate by a of Meis L. PubMed Scopus Google Scholar). of the E2-P P–O is an between the P–O bond destabilization and to the phosphate group observed in and the that the phosphate group is E2-P 1989; PubMed Scopus Google Scholar). The was from the that the of phosphate and E2-P are the that of acetyl phosphate is that of a of E2-P of has which was to the of the phosphate of the phosphate it to the 1989; PubMed Scopus Google Scholar). This the phosphate group and a to protein and the of protein and be that are the phosphate group are caused by The observed of E2-P to the of two of two three the transfer of two from to protein A. and in W. and New Scholar, of New Scholar), which from the phosphate weaker to the phosphate group be by between other and by We one to the aspartyl moiety. the weaker to the phosphate group is to bond are one to the and the is it is to the aspartyl phosphate in of of to the phosphate of aspartyl phosphate the that the phosphate group E2-P is with acetyl phosphate the of and protein is of the E2-P in bond by the phosphate group the of the phosphate with Soc. Scopus Google Scholar), it can be that an bridging P–O bond and terminal oxygens to in one to the for Soc. Scopus Google Scholar), the angle between bridging P–O bond and terminal P–O bonds from a of for acetyl phosphate in to for the E2-P phosphate This for and an to the of an of the E2-P phosphate in angle between bridging and terminal P–O bonds the angle between two terminal P–O This can be by caused by the in bonds with bond in to for the of W. M. Scopus Google Scholar). in phosphate between E2-P and acetyl phosphate the E2-P phosphate group for the E2-P bond valence of bonds can be formal charges that for of a to the charge of the The in The Press, Scholar). bonds by are and of are of and in The in The Press, Scholar). The formal charge of the three terminal acetyl phosphate oxygens is and that of the E2-P phosphate oxygens formal charges the charge is the for acetyl phosphate and aspartyl phosphate, the of formal charge the terminal oxygens of E2-P be by an in charge a in charge in the aspartyl moiety. This a shift of charge from the group the aspartyl of the charge distribution the aspartyl to the of for phosphate transfer in the (1Mildvan A.S. Proteins. 1997; 29: 401-416Crossref PubMed Scopus (255) Google the where the and P–O bonds bonds with in the transition and the dissociative mechanism where the bridging P–O bond is a bond is with the and the transition state is The of E2-P in with of acetyl phosphate the state of E2-P resemble somewhat the transition state of a dissociative terminal P–O a weaker bridging P–O charge the terminal and a shift of charge from the phosphate to the aspartyl moiety. The of the bridging P–O bond by Å of the for the dissociative mechanism Å (1Mildvan A.S. Proteins. 1997; 29: 401-416Crossref PubMed Scopus (255) Google of to of the to the the E2-P bond valence of bonds to terminal in acetyl phosphate is which bond for the of bond and three The in The Press, Scholar), which with the of of Scopus Google Scholar). This that bonds to acetyl phosphate in are found between The in The Press, Scholar). to the aspartyl phosphate of E2-P is by to with acetyl phosphate in a of three the bond valence of an bond is to This bond valence between phosphate oxygens and protein is bond valence is with bonds in and between The in The Press, Scholar). it to of a of the phosphate group, the interactions are with to of acetyl phosphate in This can be by in bond the of Å to bond valence bond The in The Press, Scholar) We two for the of to the terminal phosphate oxygens of E2-P with to acetyl phosphate in a of bonds at the of bonds and a of one of the bonds that accounts for the in of between E2-P and acetyl the the of bond valence to an in bond This is Å by using the bond valence bond for bonds with Å The in The Press, Scholar). a of the phosphate is to the bridging P–O bond by the a of one bond a of a bond between a terminal and Mg2+ for the weaker bonds in E2-P. Mg2+ bonds of and a bond of Å with in bond to Å is to the bond valence to and to for the in for E2-P. in bond are to the bridging P–O bond with a the catalytic of the of the we a shift of –0.2 formal charges from the group to the aspartyl moiety. formal charge is to bond the aspartyl of E2-P interactions with the that are from of the acetyl of acetyl The for the in interactions to be the two of the aspartyl which are to bonds in E2-P. The bonds to the of E2-P be somewhat of acetyl phosphate, which for valence of bond valence of see bond to the bridging is by the that the bond of the bridging to the has a bond valence of the bond is to a bond valence of in the of This is at with the of which that bonds to be the The in The Press, Scholar). the between the two the bridging a to which the bond valence of the with protein interactions with the bridging found for phosphate Biochem. 1997; PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, W. A. PubMed Scopus Google Scholar, G. PubMed Scopus Google Scholar, C. L. PubMed Scopus Google Scholar). The to the aspartyl accounts for valence to one It to that the aspartyl phosphate of E2-P one bond acetyl phosphate in it is that the bonds to the aspartyl are bonds are shorter of interactions with of the aspartyl with ions is in E2-P –0.2 formal charges are shifted from the to the aspartyl moiety. The charge the oxygens can be by Mg2+ by which is to in the of the and the of the ATPase C. M. PubMed Scopus Google Scholar, C. PubMed Scopus Google Scholar). Mg2+ and a three of charge by of can bonds bond We suggest that Mg2+ and Lys684 with the aspartyl oxygens of E2-P. The of of Mg2+ to a in the distribution the phosphate The of the terminal phosphate oxygens of E2-P with of acetyl phosphate with Mg2+ to the valence The in The Press, Scholar) and a for an with bond the in formal charge the aspartyl oxygens in E2-P and a for it is that Mg2+ weaker bonds with phosphate oxygens and a bond with an aspartyl Mg2+ bridging a phosphate and an aspartyl of aspartyl phosphate can be in a protein is by the model compound acetyl phosphate the is Soc. Scopus Google Scholar). the reaction, of the ATPase by phosphate, an a for the and the reaction by 29: PubMed Scopus Google Scholar). for the of the E2-P the we a model for the interactions of the of which is in to model Mg2+ the and a terminal phosphate the of Lys684 with the bridging with the important of Lys684 in it was found that is for and of the phosphoenzyme to E2-P J.P. PubMed Google Scholar). was a structure of the ATPase was PubMed Scopus Google Scholar) that for a the here for bridging and a to the bridging Å are also found for other that an aspartyl phosphate the of PubMed Scopus Google Scholar), W. A. PubMed Scopus Google Scholar), and G. PubMed Scopus Google Scholar), with the two to the the of the Ca2+-ATPase L. Biochem. Scopus Google Scholar). bridging a Å from the bridging is observed for the C. L. PubMed Scopus Google Scholar). bridging a phosphate and the cannot the high hydrolysis rate of the Ca2+-ATPase two phosphoenzymes with that are to PubMed Scopus Google Scholar, G. PubMed Scopus Google Scholar). we that the interactions with the aspartyl oxygens be weaker for and for and the interactions with the phosphate oxygens be two to the phosphate oxygens and to the aspartyl oxygens in the The is from the bridging in the structure and the phosphate group an with at one of the phosphate oxygens in with in the structure G. PubMed Scopus Google Scholar). the structure of two phosphate oxygens are to two in a and the bridging is which a bond to the with an bond valence of The in The Press, Scholar) the of which is weaker observed with Mg2+ in the other W. A. PubMed Scopus Google Scholar, G. PubMed Scopus Google Scholar) with bond the of of the with the was in the state with aspartyl phosphate that the phosphoenzyme and is the protein where the interactions with the aspartyl oxygens are from the is to the bridging and Mg2+ Å from the The between and the of the between acetyl phosphate and E2-P to be a for the that the of and E2-P. The aspartyl phosphate to be in a acetyl phosphate in and phosphate are found at A. W. Biophys. PubMed Scopus Google Scholar). we that the relative of noncovalent to the phosphate and aspartyl oxygens is one of the that the hydrolysis rate of the ATPase phosphoenzymes and related phosphoproteins. to the phosphate oxygens and to the aspartyl oxygens and the bridging P–O which the catalytic of the of the P–O bond is by bond is an of aspartyl phosphate to a shift of interactions from phosphate to aspartyl oxygens. the relative can be by the relative positioning of Mg2+ and Lys684 between phosphate and aspartyl oxygens with in This an for the to hydrolysis. We W. for and of W. for the of M. for for for for and for and the bond valence

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.400

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.237
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations32
Published2004
Admission routes1
Has abstractyes

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