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EMPIRICAL EVALUATION OF NEUTRAL THEORY

2006· article· en· W2042099788 on OpenAlexfundno aff
Brian J. McGill, Brian A. Maurer, Michael D. Weiser

Bibliographic record

VenueEcology · 2006
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsnot available
FundersMcGill UniversityNational Science Foundation
KeywordsNeutral theory of molecular evolutionMultinomial distributionNull hypothesisA priori and a posterioriSet (abstract data type)MathematicsEconometricsFalsifiabilityStatistical physicsStatisticsMathematical economicsComputer sciencePhysicsBiologyEpistemologyQuantum mechanics

Abstract

fetched live from OpenAlex

We describe a general framework for testing neutral theory. We summarize similarities and differences between ten different versions of neutral theory. Two central predictions of neutral theory are that species abundance distributions will follow a zero-sum multinomial distribution and that community composition will change over space due to dispersal limitation. We review all published empirical tests of neutral theory. With the exception of one type of test, all tests fail to support neutral theory. We identify and perform several new tests. Specifically, we develop a set of best practices for testing the fit of the zero-sum multinomial (ZSM) vs. a lognormal null hypothesis and apply this to a data set, concluding that the lognormal outperforms neutral theory on robust tests. We explore whether a priori parameterization of neutral theory is possible, and we conclude that it is not. We show that non-curve-fitting predictions readily derived from neutral theory are easily falsifiable. In toto, there is a current overwhelming weight of evidence against neutral theory. We suggest some next steps for neutral theory.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.101
metaresearch head score (Gemma)0.423
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.101
Threshold uncertainty score0.533

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1010.423
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0080.006
Science and technology studies0.0020.014
Scholarly communication0.0070.011
Open science0.0040.005
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0100.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.297
Teacher spread0.277 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations414
Published2006
Admission routes1
Has abstractyes

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