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Record W2049782797 · doi:10.1158/1538-7445.am2013-4855

Abstract 4855: Poor performance of published clinical screening criteria for the population-based identification of endometrial cancer patients with Lynch Syndrome.

2013· article· en· W2049782797 on OpenAlexaff
Amanda Bruegl, Bojana Djordjevic, Bryan Fellman, Diana L. Urbauer, Raja Luthra, Karen H. Lu

Bibliographic record

VenueCancer Research · 2013
Typearticle
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsOttawa Hospital
Fundersnot available
KeywordsLynch syndromeMSH6MedicinePMS2Endometrial cancerMLH1Family historyPopulationOncologyInternal medicineCancerGynecologyColorectal cancerMSH2Microsatellite instabilityDNA mismatch repairGeneticsBiology

Abstract

fetched live from OpenAlex

Abstract Objective: Clinically based risk assessment tools, targeting those with young age of cancer onset and family history of specific cancers, have been used to identify individuals with Lynch Syndrome (LS). Women with LS are equally likely to develop endometrial carcinoma (EC) as they are colorectal carcinoma (CRC). To identify women presenting with EC at risk for LS, the Society of Gynecologic Oncology (SGO) published recommendations in 2007 regarding which patients would benefit from further genetic evaluation for LS. These criteria are comparable to the Revised Bethesda Guidelines. The primary objective of this study was to evaluate SGO criteria's ability to predict women at risk for LS in the EC population and to ascertain if alternative criteria exist that can better identify high-risk patients. Methods: 408 sequential EC cases were evaluated for immunohistochemical expression of four DNA mismatch repair (MMR) proteins. Tumors with loss of MSH2, MSH6 or PMS2 were designated as probable Lynch Syndrome (PLS). Tumors with loss of MLH1 and absence of MLH1 promoter methylation were also designated PLS. Clinical and pathologic data were collected from the electronic medical record. Results: Of the 408 EC cases, 43 (10.5%) of the patients were defined as probable Lynch Syndrome (PLS). 97/408 (23.7%) of EC cases met SGO criteria, but only 14 of these 97 cases (14.4%) were PLS. Of the 43 PLS cases, 29/43 (67.4%) did not meet SGO criteria. Comparison of clinical and pathologic characteristics, including age of cancer diagnosis and family history of EC and/or CRC, revealed no statistically significant differences between sporadic and PLS tumors with the exception of tumors arising from the lower uterine segment. Tumors with this sight of origin are more likely to be associated with PLS. The sensitivity and specificity of SGO criteria was 32.6% and 77.2%, respectively. Conclusions: Existing clinical guidelines for detecting endometrial carcinoma patients at elevated risk for having Lynch Syndrome perform poorly in an unselected patient population. With the exception of tumors arising from the lower uterine segment, there are no statistically significant clinical or pathological differences between sporadic tumors and PLS tumors. Lower uterine segment EC occurs in only 3% of all EC cases and is not a useful screening tool. SGO clinical criteria correctly identified 32.6% of women with PLS, which results in missed CRC screening opportunities for 67% of women with increased risk profiles. These results suggest that the SGO guidelines are inadequate for identifying LS. Given the lack of effective clinical or pathological screening tools, MMR IHC and MLH1 methylation testing of all endometrial cancer patients may be the best way to identify women at risk for having Lynch Syndrome. Citation Format: Amanda S. Bruegl, Bojana Djordjevic, Bryan M. Fellman, Diana L. Urbauer, Raja Luthra, Karen H. Lu. Poor performance of published clinical screening criteria for the population-based identification of endometrial cancer patients with Lynch Syndrome. [abstract]. In: Proceedings of the 104th Annual Meeting of the American Association for Cancer Research; 2013 Apr 6-10; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2013;73(8 Suppl):Abstract nr 4855. doi:10.1158/1538-7445.AM2013-4855

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.050
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.047

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.050
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.115
GPT teacher head0.443
Teacher spread0.327 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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