NMR structure of protein yjbR from <i>Escherichia coli</i> reveals ‘double‐wing’ DNA binding motif
Bibliographic record
Abstract
Introduction.126-residue protein yjbR (gi|85674275, SwissProt/TrEMBL ID YJBR_ECOLI, access number P0AF50) encoded by gene YJBR_ECOLI from Escherichia coli has no significant sequence similarity with any protein with known three-dimensional structure.Protein yjbR was selected by the Protein Structure Initiave-2 of the United States National Institutes of Health and was assigned to the Northeast Structural Genomics Consortium (NESG; http://www.nesg.org)(NESG target ID ER226).Protein yjbR belongs to Protein Family (Pfam 1 ) PF04237 which contains 133 proteins.No functional annotations are so far available.Here we report the high-quality NMR solution structure of protein yjbR, which was determined by recently developed rapid NMR data collection and analysis protocol for high-throughput protein structure determination.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.003 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".