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Record W2051085800 · doi:10.2174/138920111795909113

Harnessing Metabolomics for Nutrition Research

2011· review· en· W2051085800 on OpenAlexaff
Michael A. Zulyniak, David M. Mutch

Bibliographic record

VenueCurrent Pharmaceutical Biotechnology · 2011
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsMetabolomicsComputational biologyComputer scienceData scienceBiologyBioinformatics

Abstract

fetched live from OpenAlex

Comprehensive analytical technologies are rapidly becoming a cornerstone of modern nutritional sciences. Two of these technologies, mass spectrometry (MS) and nuclear magnetic resonance (NMR), have proven highly informative for the global analysis of metabolites, commonly referred to as metabolomics. Metabolomics provides a powerful approach to study small molecules in order to better understand the implications and subtle perturbations in metabolism triggered by nutrients. By studying how dietary molecules can modulate the metabolome, researchers have begun to elucidate the molecular pathways by which nutrients affect health and disease, expand the current state of knowledge regarding how inter-individual variability contributes to differences in nutrient metabolism, and develop novel avenues of research for nutritional sciences. Although metabolomics has been more commonly used to study disease states, its use in the nutritional sciences is gaining momentum. The current review is written for the clinical researcher wishing to incorporate metabolomics into dietary intervention studies. This review will highlight the importance and benefit of identifying biomarkers that accurately reflect changes in nutrient intake and metabolism, and present numerous issues that can introduce variability into a dataset and confound a study's biological interpretation, including sample population demographics, the biological specimen selected, diurnal variation, collection methods, and sample storage parameters. Considering these important areas at the experimental design stage will ensure that metabolomics provides a comprehensive and accurate assessment of the molecular impact of a dietary intervention.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.004
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0040.004
Science and technology studies0.0000.002
Scholarly communication0.0030.004
Open science0.0010.002
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.297
GPT teacher head0.497
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2011
Admission routes1
Has abstractyes

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