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Record W2055026308 · doi:10.5539/jas.v2n2p41

Genetic Polymorphism between Tobacco Cultivar-groups Revealed by Amplified Fragment Length Polymorphism Analysis

2010· article· en· W2055026308 on OpenAlexvenueno aff
Jessada Denduangboripant, Tianrat Piteekan, Matchima Nantharat

Bibliographic record

VenueJournal of Agricultural Science · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Pathogens and Resistance
Canadian institutionsnot available
FundersThailand Research Fund
KeywordsAmplified fragment length polymorphismCultivarBiologyPrimer (cosmetics)Polymorphism (computer science)Geneticsgenomic DNAHorticultureGeneGenotypeGenetic diversityMedicinePopulationChemistry

Abstract

fetched live from OpenAlex

Tobacco (Nicotina tabacum) has been introduced to Thailand for hundreds of years. All tobaccos cultivated inthe country are legally separated to local (or early-imported) and imported cultivar groups. However, no methodcould precisely differentiate the two groups, especially from cured leaf samples. Amplified fragment lengthpolymorphism (AFLP) analysis was introduced to estimate genetic polymorphism of 19 tobacco cultivars grownin Thailand. Thirty-two selective primer-combinations were screened on the genomic DNA extracted from curedleaves. Three primer pairs were selected and resulted in 139 scorable AFLP fragments, of which 103 (74.1%)were polymorphic. Genetic relationship analysis revealed clustering patterns of tobacco samples generallyfollowing the cultivar groups. Almost all local cultivars were found closely related to Burley and Turkish typesof the imported group, but significantly separated from Virginia type. Our finding therefore should be animportant knowledge for further research on cultivar identification and genetic improvement of tobaccos.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.210
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2010
Admission routes1
Has abstractyes

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