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Repeated and spontaneous switching of the chemokine co-receptors used by HIV-1 is rare in vivo

2000· article· en· W2055669083 on OpenAlexaff
Claire Veryard, C. Javan, Sunil Shaunak

Bibliographic record

VenueAIDS · 2000
Typearticle
Languageen
FieldImmunology and Microbiology
TopicHIV Research and Treatment
Canadian institutionsCegep de Sept Iles
Fundersnot available
KeywordsPeripheral blood mononuclear cellChemokine receptorChemokineReceptorChemokine receptor CCR5In vivoImmunologyCXC chemokine receptorsCC chemokine receptorsSyncytiumCXCL2MedicineVirologyVirusBiologyIn vitroInternal medicine

Abstract

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HIV-1 uses CD4 cells as its primary receptor and a chemokine co-receptor as its secondary receptor to gain entry into cells [1]. Initial studies suggested that the dissemination of HIV-1 from lymphoid organs to non-lymphoid tissues was associated with an expansion in the number of chemokine co-receptors being used by the virus [2,3]. The rapid progression to AIDS and death of patients whose viral isolates changed from R5 (non-syncytium inducing) to R5X4 (syncytium inducing) supported this conclusion [4]. The factors that promote this switch in viral phenotype have not been established. We investigated whether repeated and spontaneous switching of the chemokine co-receptors being used by the virus is more common in vivo than has been recognized in the cross-sectional studies that have been performed [5]. Blood was collected every 3–4 months from 62 HIV-1-positive patients attending the outpatient clinics at Hammersmith Hospital during the 7 years from 1992 to 1999. Preservative-free heparin (20 IU/ml) was used up to 1994, and acid citrate dextrose (Vacutainer, Beckton Dickinson, NJ, USA) was used thereafter. Samples were processed within 4 h of collection. Peripheral blood mononuclear cells were separated and co-cultured with peripheral blood mononuclear cells from HIV-seronegative donors as previously described [6]. Cell-free culture supernatants were harvested on day 14 and stored in liquid nitrogen. Viral isolates with a p24 antigen of 2 ng/ml or greater (EIA; Beckman Coulter; High Wycombe, UK) were used to phenotype the virus using U87.CD4 transformed cells expressing each of the chemokine co-receptors CCR1, CCR2b, CCR3, CCR5 and CXCR4 (MRC AIDS Reagent Project; NIBSC, Potters Bar, UK). Cells were plated at 4 × 104/ml in 48-well trays and 1000 TCID50 units or more of a low passage (< 2) primary viral isolate was added [6]. Virus was removed by washing at 24 h and the cells stained immunohistochemically for p24 antigen at day 4. A positive result required the presence of five or more p24 antigen-positive multinucleated giant cells. The 62 patients were followed for an average of two consecutive years during the course of the study. The mean number of virus isolations per patient was 5.4 ± 2.9 (range 2–26). During this time, patients were treated with antiretroviral drugs as they became available, and in accordance with clinical guidelines at that time. Most patients were found either to retain the chemokine co-receptor phenotype identified on first isolation of the virus, or to make a single stable switch during the course of their long-term follow-up. Forty-four patients with a R5 phenotype and 11 patients with an R5X4 phenotype retained their phenotype without any changes. Five patients switched from an R5 to a stable R5X4 phenotype. In only two patients did we find unequivocal evidence of repeated and spontaneous switching of the viral chemokine co-receptor phenotype without definitive evidence of an acute opportunistic infection (Fig. 1). Both had late-stage AIDS with CD4 cell counts of less than 50 × 109/l. In the first case (HH1), the patient's disseminated cytomegalovirus infection was difficult to control despite maintenance therapy with ganciclovir and foscarnet. In the second case (HH5), the patient had widely disseminated Kaposi's sarcoma that was associated with human herpesvirus type 8 infection. It is therefore possible that chronic, recurrent viral infections were responsible for the repeated changes in chemokine co-receptor tropism identified in these two patients. Expansion of their chemokine co-receptor tropism to a stable R5X4R3 phenotype only occurred in the few months before they died, despite continuous treatment with antiretroviral and antiviral agents.Fig. 1.: Repeated and spontaneous changes in chemokine co-receptor use seen in low-passage primary viral isolates from two patients while they were clinically well. A cross denotes the death of the patient.Cilliers et al. [7] recently reported the results of a clinical study whose aim was to determine the chemokine co-receptor tropism of primary viral isolates from South African patients presenting for the first time with late-stage AIDS. Their viral isolates used CCR5 and/or CXCR4 as well as CCR3, CCR2b, CCR1, CCR8, V28 and Bob. However, most of these patients also had a major opportunistic infection that resulted in their death. These observations suggest that a stable expansion of the tropism of HIV-1 to include the use of multiple chemokine co-receptors is a pre-terminal event in the course of the disease. Therefore, in patients who are clinically well, as defined by their clinical condition and a normal complement reactive protein, the only physiologically important chemokine co-receptors being used by blood-derived isolates of HIV-1 are CCR5 and CXCR4. In such patients, repeated and spontaneous switching of chemokine co-receptor use occurs rarely, if at all. Acknowledgements The authors are grateful to all the patients who participated in this study. Claire Veryard Caroline Javan Sunil Shaunak

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.106
Threshold uncertainty score0.996

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0050.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.232
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations3
Published2000
Admission routes1
Has abstractyes

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