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Record W2062642210 · doi:10.4103/1319-3767.114502

Can the prevalence of symptoms in patients with inflammatory bowel disease be predicted by the analysis of multidrug resistance gene 1 polymorphisms?

2013· letter· en· W2062642210 on OpenAlexaff
Miguel Ángel Chiurillo

Bibliographic record

VenueSaudi Journal of Gastroenterology · 2013
Typeletter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsWestern University
Fundersnot available
KeywordsMedicineInflammatory bowel diseaseMultiple drug resistanceDiseaseInternal medicineDrug resistanceGenetics

Abstract

fetched live from OpenAlex

Ulcerative colitis (UC) and Crohn's disease (CD) are chronic inflammatory disorders of the gastrointestinal tract that have a significant lifelong impact on a patient's quality of life with a highly variable and uncertain clinical course.[1] The prevalence rate of these inflammatory bowel diseases (IBDs) reach up to 396/100,000 people, with a remarkable increased globalization together with other “Western disorders.”[2] Although the etiology of IBD is poorly understood, it is thought to arise from dysregulation of both the innate and adaptive immune systems; leading to an abnormal inflammatory response to host's microbiota in a genetically susceptible individual. Moreover, there is accumulating evidence that genetic factors are implicated in the development of IBD, with the multidrug resistant gene (MDR1 or ABCB1) as an interesting candidate gene for the pathogenesis of IBD. MDR1 is located at 7q21.1 and encodes for the membrane transport protein P-glycoprotein (Pgp), which functions as an Adenosine Triphosphate-dependent efflux transporter pump. Pgp is highly expressed in the intestinal epithelium and influence the pharmacokinetics of many drugs and xenobiotics (e.g., glucocorticoids), and likely plays a role in the modulation of host-bacteria interactions.[3] First insight into the pathogenesis of IBD comes from the description of spontaneous colitis in mdr1a knock-out mice with a pathology similar to that of human IBD under pathogen-free conditions.[4] This finding, combined with the report that MDR1 gene expression is significantly reduced in the colonic tissue of UC patients, make this gene an excellent positional and functional IBD candidate gene. MDR1 is polymorphic, with more than 50 single nucleotide polymorphisms (SNPs) in the coding region of the gene.[5] The number and frequency of SNPs and haplotypes observed varies by ethnicity. Two SNPs, namely the triallelic G2677T/A (rs2032582) in exon 21 and C3435T (rs1045642) in exon 26, have been shown to correlate with Pgp expression. Association of these SNPs with both CD and UC, either as a single marker or combined, has been extensively studied. However, following initial positive associations subsequent studies have yielded contradictory results.[67] Moreover, C1236T, G2677T/A and C3435CT SNPs occur frequently and have strong linkage, creating a common haplotype.[5] Two recent meta-analysis of the available findings evaluating the three mentioned MDR1 polymorphisms with susceptibility to IBD coincide in showing a slight, but significant association for the C3435T variant in UC, in contrast no association in CD patients or in IBD patients as a whole was found.[67] During the past decade the incidence of IBD, especially UC, appears to be increasing in Iran, reaching a similar incidence to that of developing countries, with differences in the distribution pattern of IBD susceptibility genes in various ethnicities; however, the infrequency of CD in Iran is noted.[8] This tendency has been suggested to be associated with the gradual adoption of a Western life-style. Considering studies on MDR1 gene polymorphisms world-wide, allele and genotype frequencies of C3435T polymorphism depends strongly on the ethnicity of the investigated population. Therefore, it is highly justified to investigate the association of MDR1 polymorphisms with susceptibility to IBD in a country like Iran, which is a state with different ethnicities and a wide geography. In this issue of the Saudi Journal of Gastroenterology, a study by Bonyadi et al.,[9] assessed the association of C3435T polymorphism of MDR1 with the risk of developing IBD in 116 patients from the Iranian Azeri Turk ethnic group who inhabit northwestern parts of Iran. The authors were unable to get significant differences in genotype or allelic distribution between patients and control groups, even when they considered UC and CD patients separately. Their results contrast with a case-control study including 300 UC Iranian patients carried out in Tehran, which showed that the frequencies of the 3435T allele and homozygote TT genotype were significantly higher in UC patients compared to the controls,[10] as previously reported in western countries. However, the article of Bonyadi et al.,[9] demonstrates an association between C3435T variant and the risk of presenting typical intestinal signs and symptoms of IBD. According to their results, patients with TT genotype and carriers of 3435T allele are more susceptible to suffer abdominal pain and persistent diarrhea (P < 0.02). Similarly, the frequency of 3435T allele was higher in patients who reported vomiting and dysentery, although the value did not reach statistical significance. Furthermore, of note is the slight predominance of the 3435T allele frequency observed in healthy controls (53.8% vs. 46.1% of 3435C). Authors performed comparisons of allele frequency distribution of C3435T with those reported for different populations and ethnic groups of the world. However, they did not make a comparative analysis with C3435T population frequencies reported for other Iranian ethnic groups and populations, where C allele frequencies range from 43.7% to 66.5%.[10111213] Another weakness of the study is the relatively small sample size that reduces the power to detect a possible effect. Furthermore, the article does not go into details with regards to information about the IBD phenotype based on clinical and paraclinical parameters, including disease status (e.g., active, in remission or relapse). Nonetheless, this data adds to the growing literature needed to draw secure conclusions regarding the association of MDR1 variants and development of IBD, further emphasizing the importance of replication of results of genetic studies in different ethnic groups. In conclusion, the study of Bonyadi et al., raises the possibility that the analysis of genetic polymorphisms can be used to predict the severity of the symptoms and signs of IBD; thus, this information could be used to provide a better quality of life to IBD patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.075
Threshold uncertainty score0.966

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.182
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2013
Admission routes1
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