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Record W2063608733 · doi:10.1063/1.2196888

Efficient partitioning technique for computing the dynamics of intramolecular processes: Radiationless transitions in pyrazine

2006· article· en· W2063608733 on OpenAlexaff
P. S. Christopher, Moshe Shapiro, Paul Brumer

Bibliographic record

VenueThe Journal of Chemical Physics · 2006
Typearticle
Languageen
FieldPhysics and Astronomy
TopicSpectroscopy and Quantum Chemical Studies
Canadian institutionsUniversity of British ColumbiaUniversity of Toronto
Fundersnot available
KeywordsParallelizable manifoldPyrazineEigenvalues and eigenvectorsSpeedupHamiltonian (control theory)ScalingIntramolecular forceMolecular dynamicsComputer scienceBasis setAlgorithmStatistical physicsPhysicsMathematicsComputational chemistryParallel computingChemistryMathematical optimizationQuantum mechanicsDensity functional theory

Abstract

fetched live from OpenAlex

An efficient QP partitioning algorithm to compute the eigenvalues, eigenvectors, and the dynamics of large molecular systems of a particular type is presented. Compared to straightforward diagonalization, the algorithm displays favorable scaling (proportional to N(T)2) as a function of N(T), the size of the Hamiltonian matrix. In addition, the algorithm is trivially parallelizable, necessitating no "cross-talk" between nodes, thus enjoying the full linear speedup of parallelization. Moreover, the method requires very modest storage space, even for extremely large matrices. The method has also been enhanced through the development of a coarse-grained approximation, enabling an increase of the basis set size to unprecedented levels (10(8)-10(10) in the current application). The QP algorithm is applied to the dynamics of electronic internal conversion in a 24 vibrational-mode model of pyrazine. A performance comparison with other dynamical methods is presented, along with results for the decay dynamics of pyrazine and a discussion of resonance line shapes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.417
Threshold uncertainty score0.202

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.244
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2006
Admission routes1
Has abstractyes

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