MétaCan
Menu
Back to cohort
Record W2068051295 · doi:10.2135/cropsci2012.05.0301

Biplot Analysis of Incomplete Two‐Way Data

2012· article· en· W2068051295 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueCrop Science · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetics and Plant Breeding
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiplotMissing dataTable (database)Singular value decompositionStatisticsData miningAvenaComputer scienceMathematicsBiologyArtificial intelligenceGenotypeAgronomy

Abstract

fetched live from OpenAlex

As a graphical data analysis tool, biplot analysis has increasingly been used in analyzing genotype × environment data and other types of two‐way data. One limitation of biplot analysis is that it requires a complete two‐way table. This paper reports on a procedure for estimating missing values in a two‐way table so that incomplete data can be effectively analyzed using biplots. This procedure involves iteration of missing values based on singular value decomposition (SVD), which is the basic technique for biplot analysis. Simulation indicates that the proposed procedure successfully predicts missing values and recovers patterns for two sample datasets. On a smaller wheat ( Triticum aestivum L.) dataset, the estimation was successful only when the proportion of missing data was less than 40%; for a larger oat ( Avena sativa L.) dataset, the estimation was successful even when 60% of the data were treated as missing. The use of the SVD‐based missing‐value‐estimation procedure enabled incomplete multiple‐year data to be effectively analyzed in a single biplot. As a result, genotypes not tested in the same environments can be reasonably compared, and genotypes that have not been fully tested can be critically evaluated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.802
Threshold uncertainty score0.232

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.158
GPT teacher head0.297
Teacher spread0.139 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it