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Record W2068051295 · doi:10.2135/cropsci2012.05.0301

Biplot Analysis of Incomplete Two‐Way Data

2012· article· en· W2068051295 on OpenAlexaff
Weikai Yan

Bibliographic record

VenueCrop Science · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetics and Plant Breeding
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiplotMissing dataTable (database)Singular value decompositionStatisticsData miningAvenaComputer scienceMathematicsBiologyArtificial intelligenceGenotypeAgronomy

Abstract

fetched live from OpenAlex

As a graphical data analysis tool, biplot analysis has increasingly been used in analyzing genotype × environment data and other types of two‐way data. One limitation of biplot analysis is that it requires a complete two‐way table. This paper reports on a procedure for estimating missing values in a two‐way table so that incomplete data can be effectively analyzed using biplots. This procedure involves iteration of missing values based on singular value decomposition (SVD), which is the basic technique for biplot analysis. Simulation indicates that the proposed procedure successfully predicts missing values and recovers patterns for two sample datasets. On a smaller wheat ( Triticum aestivum L.) dataset, the estimation was successful only when the proportion of missing data was less than 40%; for a larger oat ( Avena sativa L.) dataset, the estimation was successful even when 60% of the data were treated as missing. The use of the SVD‐based missing‐value‐estimation procedure enabled incomplete multiple‐year data to be effectively analyzed in a single biplot. As a result, genotypes not tested in the same environments can be reasonably compared, and genotypes that have not been fully tested can be critically evaluated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.050
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.014
Threshold uncertainty score0.072

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0140.050
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.003
Bibliometrics0.0060.008
Science and technology studies0.0010.001
Scholarly communication0.0030.002
Open science0.0010.002
Research integrity0.0010.003
Insufficient payload (model declined to judge)0.0110.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.158
GPT teacher head0.297
Teacher spread0.139 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations53
Published2012
Admission routes1
Has abstractyes

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