Temperature dependence of hydrophobic interactions: A mean force perspective, effects of water density, and nonadditivity of thermodynamic signatures
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Bibliographic record
Abstract
Temperature-dependent properties of hydrophobic interactions are investigated by simulating the potential of mean force (PMF) between two methane-like solutes in TIP4P model water. Independent results from test particle insertion and free energy perturbation are compared to ensure that zero-PMF baselines are accurate. PMFs are computed under atmospheric pressure at five temperatures from 5 to 95 °C using constant-pressure simulations. The temperature dependence we observe does not agree with previous results from constant-volume simulations, highlighting the important effects of temperature-dependent water density on PMFs. Heat capacity changes upon association of two solutes are estimated at the PMF contact minimum, desolvation barrier, and the solvent (water)-separated minimum. The magnitude of the heat capacity change upon contact formation is much smaller than that predicted by the solvent accessible surface area (SASA). More surprisingly, the heat capacity change upon bringing two methanes from infinity to the desolvation barrier is large and positive. This implies that the thermodynamic signatures of the free energy barrier to desolvation have signs opposite to desolvation itself. This feature is not predicted by either SASA or a volume-based solvent exclusion model. The implications of these and other observations on implicit-solvent model potentials are discussed. Formulations based on thermodynamic perturbation and Widom’s potential distribution theory are developed to relate PMF and hydration mean forces to the underlying structural properties of aqueous solutions. In particular, we provide a theoretical perspective to understand PMF in terms of local water density and the occurrences of configurations with highly unfavorable solute–solvent repulsive interactions.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it