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Record W2075900076 · doi:10.1094/pdis.2002.86.12.1396

Biplot Analysis of Host-by-Pathogen Data

2002· article· en· W2075900076 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenuePlant Disease · 2002
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetics and Plant Breeding
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsBiplotGenotypeBiologyHost (biology)PathogenStrain (injury)VirulenceGeneticsComputational biologyGene

Abstract

fetched live from OpenAlex

Effective breeding for disease resistance relies on a thorough understanding of host-by-pathogen relations. Achieving such understanding can be difficult and challenging, particularly for large data sets with complex host genotype-by-pathogen strain interactions. This paper presents a biplot approach that facilitates visual analysis of host-by-pathogen data. A biplot displays both host genotypes and pathogen isolates in a single scatter plot; each genotype or isolate is displayed as a point defined by its scores on the first two principal components derived from subjecting genotype- or strain-centered data to singular value decomposition. From a biplot, clusters of host genotypes and clusters of pathogen strains can be simultaneously visualized. Moreover, the basis for genotype and strain classifications, i.e., interactions between individual genotypes and strains, can be visualized at the same time. A biplot based on genotype-centered data and that based on strain-centered data are appropriate for visual evaluation of susceptibility/resistance of genotypes and virulence/avirulence of strains, respectively. Biplot analysis of genotype-by-strain is illustrated with published response scores of 13 barley line groups to 8 net blotch isolate groups.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.475
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.092
GPT teacher head0.209
Teacher spread0.117 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it