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Record W2076414692 · doi:10.6090/jarq.45.77

Development of the Multiplex PCR Detection Kit for Salmonella spp., Listeria monocytogenes, and Escherichia coli O157:H7

2011· article· en· W2076414692 on OpenAlexaff
Susumu Kawasaki, Pina M. Fratamico, Naoko Kamisaki-Horikoshi, Yukio Okada, Kazuko Takeshita, Takashi Sameshima, Shinichi Kawamoto

Bibliographic record

VenueJapan Agricultural Research Quarterly JARQ · 2011
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSalmonella and Campylobacter epidemiology
Canadian institutionsConestoga Meat Packers (Canada)
Fundersnot available
KeywordsListeria monocytogenesMultiplexMultiplex polymerase chain reactionSalmonellaBiologyMicrobiologyEscherichia coliPathogenic bacteriaDNA extractionListeriaBacteriaPolymerase chain reactionGeneBioinformaticsGenetics

Abstract

fetched live from OpenAlex

This review describes the development of the multiplex PCR detection kit for Salmonella spp., Listeria monocytogenes, and Escherichia coli O157:H7 in food samples. To develop a detection assay, our research team evaluated the optimization of the pre-enrichment broth, the simple DNA extraction method, and the multiplex PCR settings. When this detection protocol was used to detect the above pathogenic bacteria, one cell per 25 g of inoculated sample was detected within 24 h. Moreover, there was excellent agreement between the multiplex PCR assay and the conventional culture method. The multiplex PCR detection assay system was confirmed to be a reliable and useful method for the rapid screening of food products for foodborne pathogens. The assay system was commercialized as a “[TA10] Pathogenic Bacterial Multiplex PCR Detection Kit”. When this kit was provided to four different laboratories for an extensive validation study, there were no significant differences in detection sensitivity among the laboratories. The detection kit will be valuable as a screening method for foods contaminated with these pathogens, and it will also be useful for identifying the sources of outbreaks of foodborne illness.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.003
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.160
GPT teacher head0.307
Teacher spread0.146 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2011
Admission routes1
Has abstractyes

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