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Record W2083709108 · doi:10.1007/s13127-010-0034-y

Females do count: Documenting Chironomidae (Diptera) species diversity using DNA barcoding

2010· article· en· W2083709108 on OpenAlexafffund
Torbjørn Ekrem, Elisabeth Stur, Paul D. N. Hebert

Bibliographic record

VenueOrganisms Diversity & Evolution · 2010
Typearticle
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsUniversity of Guelph
FundersOntario GenomicsOntario Genomics InstituteDet Kongelige Norske Videnskabers SelskabGenome CanadaMicrosoft
KeywordsBiologyDNA barcodingChironomidaeBiodiversityEcologyInvertebrateTaxonomy (biology)ZoologyHabitatSpecies diversitySpecies complexLarva

Abstract

fetched live from OpenAlex

Because the family Chironomidae, or non-biting midges, is one of the most species-rich groups of macroinvertebrates in freshwater habitats, species-level identifications of chironomids are important for biodiversity assessments in these ecosystems. Morphology-based species identifications from adult female chironomids usually are considerably more difficult than from adult males, or even impossible; thus, the females are often neglected in community assessments. We used DNA barcoding to investigate how inclusion of the females influenced the species count from springs and spring brooks at Sølendet Nature Reserve in Central Norway. By means of the barcodes we were able to identify 77.6% of the females to species by associating them with males from the study site or from other regions, whereas the remaining, unassociated females could be identified to genus level only. The number of recorded species increased by 27% when females were included. We also found that DNA barcoding is effective for the detection of taxonomically challenging species and species groups. Using DNA barcoding in combination with traditional taxonomy, we recognised at least five species new to science and three species and one genus new to Norway.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.202
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations118
Published2010
Admission routes2
Has abstractyes

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