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Record W2085252090 · doi:10.1186/gm522

Genomics for clinical utility: the future is near

2014· article· en· W2085252090 on OpenAlexafffund
David Rossolatos, Katherine J. Aitchison

Bibliographic record

VenueGenome Medicine · 2014
Typearticle
Languageen
FieldMedicine
TopicScience, Research, and Medicine
Canadian institutionsUniversity of Alberta
FundersCentre hospitalier universitaire Sainte-JustineGovernment of AlbertaUniversity of Washington
KeywordsPharmacogenomicsGenomicsPersonal genomicsHuman geneticsComputational biologyGenome BiologyGenomeMedicineData scienceBioinformaticsBiologyGeneticsComputer scienceGene

Abstract

fetched live from OpenAlex

A REPORT ON THE PRECISION MEDICINE: Personal Genomes and Pharmacogenomics meeting, Cold Spring Harbor Laboratory, USA, November 13-16, 2013.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.041
metaresearch head score (Gemma)0.030
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.041
Threshold uncertainty score0.218

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0410.030
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.001
Bibliometrics0.0020.002
Science and technology studies0.0020.016
Scholarly communication0.0120.025
Open science0.0020.006
Research integrity0.0140.022
Insufficient payload (model declined to judge)0.0380.015

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.108
GPT teacher head0.424
Teacher spread0.316 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2014
Admission routes2
Has abstractyes

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