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Record W2090094032 · doi:10.1371/journal.pone.0061344

Differential Metabolite Profiles during Fruit Development in High-Yielding Oil Palm Mesocarp

2013· article· en· W2090094032 on OpenAlexfundno aff
Huey Fang Teh, Bee Keat Neoh, May Ping Li Hong, Jaime Yoke Sum Low, Theresa Lee Mei Ng, Nalisha Ithnin, Yin Mee Thang, Mohaimi Mohamed, Fook Tim Chew, Hirzun Mohd Yusof, Harikrishna Kulaveerasingam, David R. Appleton

Bibliographic record

VenuePLoS ONE · 2013
Typearticle
Languageen
FieldEnvironmental Science
TopicOil Palm Production and Sustainability
Canadian institutionsnot available
FundersSustainable Development Technology CanadaStanford Diabetes Research CenterOffice of Experimental Program to Stimulate Competitive ResearchNational Science FoundationNational Institutes of HealthNational Center for Research ResourcesKansas IDeA Network of Biomedical Research Excellence
KeywordsMetaboliteBiochemistryBiosynthesisBiologyPalmPalm oilPopulationGlycolysisCitric acid cycleFood scienceFatty acid synthesisBotanyFatty acidMetabolismGene

Abstract

fetched live from OpenAlex

To better understand lipid biosynthesis in oil palm mesocarp, in particular the differences in gene regulation leading to and including de novo fatty acid biosynthesis, a multi-platform metabolomics technology was used to profile mesocarp metabolites during six critical stages of fruit development in comparatively high- and low-yielding oil palm populations. Significantly higher amino acid levels preceding lipid biosynthesis and nucleosides during lipid biosynthesis were observed in a higher yielding commercial palm population. Levels of metabolites involved in glycolysis revealed interesting divergence of flux towards glycerol-3-phosphate, while carbon utilization differences in the TCA cycle were proven by an increase in malic acid/citric acid ratio. Apart from insights into the regulation of enhanced lipid production in oil palm, these results provide potentially useful metabolite yield markers and genes of interest for use in breeding programmes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.190
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations47
Published2013
Admission routes1
Has abstractyes

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Same venuePLoS ONESame topicOil Palm Production and SustainabilityFrench-language works237,207