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Record W2090166673 · doi:10.1063/1.3637035

Multiple time scale molecular dynamics for fluids with orientational degrees of freedom. I. Microcanonical ensemble

2011· article· en· W2090166673 on OpenAlexaff
I. P. Omelyan, Andriy Kovalenko

Bibliographic record

VenueThe Journal of Chemical Physics · 2011
Typearticle
Languageen
FieldPhysics and Astronomy
TopicSpectroscopy and Quantum Chemical Studies
Canadian institutionsNational Institute for NanotechnologyUniversity of Alberta
Fundersnot available
KeywordsMicrocanonical ensembleDegrees of freedom (physics and chemistry)Statistical physicsMolecular dynamicsLimit (mathematics)Statistical ensembleCanonical ensemblePhysicsScale (ratio)Classical mechanicsMathematicsQuantum mechanicsMonte Carlo methodMathematical analysisStatistics

Abstract

fetched live from OpenAlex

We propose a new approach to eliminate the resonance instabilities inherent in multiple time step molecular dynamics simulations. The approach is developed within the microcanonical ensemble on the basis of an energy-constrained technique in the presence of orientational degrees of freedom. While the single and standard multiscale methods are restricted to small time steps of 5 and 8 fs, respectively, it is shown in simulations of water that the algorithms we have derived postpone the appearance of the instabilities to larger steps of about 16 fs. Such steps are close to the upper theoretical limit of 20 fs peculiar to the microcanonical ensemble and can be used without affecting static and dynamical properties.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.228
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2011
Admission routes1
Has abstractyes

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